Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01660 ATGTGCGGTGGCCCAGAGAAATCAAAATCTCTTTCAACTTCATCTTCATCTTCATCTGCAGTAGAAGGTTCAACTAACGGCAAAGACATGAAAAATCTAACTGTTCATACTGAAGATTCTTTTTCCTGCTTACTCGAGCTTGCTTCTAACAATGATTTTGAGGATTTTAAGCTAGCTTTAGATAGAGATGCTTCTCTAATAAATGAAGTTGGCATCTGGTATGTCCGTCAAATTGGGTCCAAACAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTTGCTGCTACCTATGGGAGTATAGATGTTCTAAAACTTGTACTCTCATTTCCAGAGGCTGATGTAAATTTCTCCTGTGGGACAGATAGAAGCACTGCCCTTCACTGTGCTGCATCTGGGGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTATCAGCTGGTGCTGATATCCATTGTGTGGATGCTAATGGGAACCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTTGAAGGTGTGAAAGCAACTCTTGAAGGTCTACTTTCAGATAGTGCTTCTGATGGGTCTGTCGGTGTCCACTCAATTCCAGTTTCTATTATTTCATCAAGTCCTGAATCAGCTGCTCATTTATCACCTGAAAATGGGTTGCCGTCCTCTCCTACAGTGTCAAAGTTTACTGATACATCTGTCTATTCTATTTCAGAGAAGAAAGAATATCCAATTGACCCATCACTTCCTGATATAAAGAACAGCATTTATGCAACAGATGAGTTTCGCATGTTTTCATTTAAGGTGCGTCCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCGGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTACAGTTGTGTGCCATGCCCTGATTTTAGAAAGGGGGCTTGTAGACGAGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTGCACCCAGCCCAATATCGGACAAGGCTCTGCAAGGATGGCACCAGTTGTAATAGAAGGGTATGTTTTTTTGCCCACACAACAGAAGAGCTGCGTCCATTGTATGTGTCCACTGGATCTGCTGTTCCTTCGCCCCGATCATCAGCCTCTACTCCTAATGTCATGGATATGGCTGCTGCAATGAGCATGTTTCCTGGTTCGCCGTCATCAATTTCTTCAATGTCCCAGTCTCCCTTTGCGCAGCCAATGTCTCCATCTACAAATGGCATTTCACACTCATCTACTGCTTGGTCACAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCATACTAGCCGATTGAGATCTTCTCTTAATGCTCGTGACATGACACCTGAAGACTTGGATATGTTGCGAGATTTTGATGGGCAGCAACACCTTTTGAATGACCTGGGCTGTTTCTCACAGCCCCGTCCTGGTGCCATTTCAGTGAGTCGATCTGGCCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTCTGTATTTTCTCCAACACACAAATCAGCTATTTTGAATCAGTTTCAACAGCTTCAAAGTTCGTTATCACCCATAAATACAAGTGTCTCCTCCCCTAGGAACGTTGAGCATCCTCTATTACAGGCTTCATTTGGTGTCTCTTCTCCCGGAAGGATGTCACCAAGAAGTATGGAACCAATCTCTCCGATGGGCTCTCGATTATCAGCATTTGCTCAGCGTGAGAAACAACAGCAACAGCTGCGAAGCCTTAGTTCAAGGGACCTTGGTGCCAACAATCCTGTCTCAGCGGTTGGGTCCCCGGTAAACTCCTGGTCTAATTGGGGATCCCCTCATGGGAACGGAAAAGTAGATTGGTCTGTAAATGGTAATGGGCATGGGCTTGGTCGATTGCACAGATCATCCTCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTTCAGTCCCTTGTTAAGGAATCTCCATCTGAGATGAAAGAGAAGAAGCTGGCAGGTTCTGGTCCTGTTGGATCTGCTGATGGTTTAAATTCTAACCCTCAATCTAATCAAATTGACCCTTTCCATCTTGTGATAGGGTTAGAGGAGGAACACGAGCCATGTGGGGCTTAA 2184 0.446 MCGGPEKSKSLSTSSSSSSAVEGSTNGKDMKNLTVHTEDSFSCLLELASNNDFEDFKLALDRDASLINEVGIWYVRQIGSKQIVLEHRTPLMVAATYGSIDVLKLVLSFPEADVNFSCGTDRSTALHCAASGGSVNAVDVVKLLLSAGADIHCVDANGNRPVDVIVVPPKLEGVKATLEGLLSDSASDGSVGVHSIPVSIISSSPESAAHLSPENGLPSSPTVSKFTDTSVYSISEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTTEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSMFPGSPSSISSMSQSPFAQPMSPSTNGISHSSTAWSQPNVPALHLPGSNIHTSRLRSSLNARDMTPEDLDMLRDFDGQQHLLNDLGCFSQPRPGAISVSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHKSAILNQFQQLQSSLSPINTSVSSPRNVEHPLLQASFGVSSPGRMSPRSMEPISPMGSRLSAFAQREKQQQQLRSLSSRDLGANNPVSAVGSPVNSWSNWGSPHGNGKVDWSVNGNGHGLGRLHRSSSFELGNNGEEPDLSWVQSLVKESPSEMKEKKLAGSGPVGSADGLNSNPQSNQIDPFHLVIGLEEEHEPCGA 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01660 727 SUPERFAMILY Ankyrin repeat 32 167 IPR036770 -
Cca10g01660 727 ProSiteProfiles Zinc finger C3H1-type profile. 303 325 IPR000571 GO:0046872
Cca10g01660 727 ProSiteProfiles Ankyrin repeat region circular profile. 121 155 - -
Cca10g01660 727 SMART ANK_2a 86 116 IPR002110 GO:0005515
Cca10g01660 727 SMART ANK_2a 39 69 IPR002110 GO:0005515
Cca10g01660 727 SMART ANK_2a 121 153 IPR002110 GO:0005515
Cca10g01660 727 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 24 707 - -
Cca10g01660 727 MobiDBLite consensus disorder prediction 592 630 - -
Cca10g01660 727 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 323 IPR000571 GO:0046872
Cca10g01660 727 ProSiteProfiles Ankyrin repeat profile. 121 156 IPR002110 GO:0005515
Cca10g01660 727 SMART c3hfinal6 333 356 IPR000571 GO:0046872
Cca10g01660 727 SMART c3hfinal6 298 324 IPR000571 GO:0046872
Cca10g01660 727 PANTHER UNKEMPT FAMILY MEMBER 24 707 IPR045234 -
Cca10g01660 727 MobiDBLite consensus disorder prediction 7 31 - -
Cca10g01660 727 MobiDBLite consensus disorder prediction 566 585 - -
Cca10g01660 727 Gene3D - 299 361 - -
Cca10g01660 727 MobiDBLite consensus disorder prediction 1 31 - -
Cca10g01660 727 MobiDBLite consensus disorder prediction 400 424 - -
Cca10g01660 727 Gene3D - 26 200 IPR036770 -
Cca10g01660 727 MobiDBLite consensus disorder prediction 676 708 - -
Cca10g01660 727 Pfam Ankyrin repeats (3 copies) 73 154 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01660 Cca-Chr10 29339427 29342267 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca10g01660 Ank_2 1.1e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01660 10 29339427 29342267 Cca04g01911 04 36901952 36905774 ECH
Cca10g01660 10 29339427 29342267 Cca10g01660 10 29339427 29342267 ECH
Cca04g01911 04 36901952 36905774 Cca10g01660 10 29339427 29342267 PCT