Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01623 ATGAGTGTTATGTATAGTCCTGTTCTCAAGTACTCTGATGTGGAGATTCAGCTAAGGAAAAACCAAGAAGTGGATTCAAGCTTTGGACATCCACAACAACACTGTCACCAACCCAATTCTGGACTATTGAGGTACTGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTTGTTGACAACACCATTCATGAGGAATCATTCAGAAGTGAGAATCATCAGCACTATCTTCCATCCACAAGTTCAGAAATGGAGACCATGTTGTCCAAATTGGTGTCATCCAACAATGAATGGAGCAATTCAGAAGGTTTGCAAGAAGAATTTGGAGGCAAGCCTGTGAAGCAGGAAATAGGAGAATCTGTTCCACAGCAGAATGGTTATCCTTATGGTGAGTCTCAGTTAATTTACCACCAAACTCAGCAAATTCAAGGCTTGCCAAATGGTTCTTCCAATGCTTTTGATGGCTCTTTTGGTGTGGTGAACTCCATTCAGTCTAAAATTGGTGTCAGGAATTGCTCCAATCTCTTAAGGCAAAAGAGCTCCCCTGCTGATTTTTTCTCCATTGAAAATGATCTTGCAGCATTGAGAGAAGTAGGAAGCTTTAAAGCCAATGATGTCTCAAATGGACAGGCTAATGCATCAACTAGTGGATTGCATGGAACTCTTGCTTTCCCTTCTAGGCCATCCTCATGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAAATGAAATTCTAGAAGAAAATTGTGACCAAAGTAGAAACATAGAAAATGACAATGGTAGCTCAAGATGTTACATTCCTAGCTTCACCAGTGAATTCTGGGACAGTTCTGCATTCAATGCTCCCAAAACAGAAAGTGAAGATGAAATCATGTTTTCCACTTCAAATGTTTTGGAATCTCAGGAAGCAGATTTCAGCTATCAAAATCTTGGTTTGACTCACCATTTGAGTCTACCTAGTTCTTCTACTAAGATGTCATCCATAGAGAAGTTTCTTCAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGGAGAACAAGGATTAGTGAAAGAATCAAGAAATTGCAAGGCCTTTTCCCAAAATCAGATAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGATTACATTAAGGACCTGCAGCAACAAGTTAAGGTACTCACAGATTGCAAGGCAAAGTGCAAATGTACAAGTAATGAGAAGCATTACACTAGAACTTGTTCCTGA 1278 0.403 MSVMYSPVLKYSDVEIQLRKNQEVDSSFGHPQQHCHQPNSGLLRYCSAPSSLLASLVDNTIHEESFRSENHQHYLPSTSSEMETMLSKLVSSNNEWSNSEGLQEEFGGKPVKQEIGESVPQQNGYPYGESQLIYHQTQQIQGLPNGSSNAFDGSFGVVNSIQSKIGVRNCSNLLRQKSSPADFFSIENDLAALREVGSFKANDVSNGQANASTSGLHGTLAFPSRPSSCLKRMPQIAENGNEILEENCDQSRNIENDNGSSRCYIPSFTSEFWDSSAFNAPKTESEDEIMFSTSNVLESQEADFSYQNLGLTHHLSLPSSSTKMSSIEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQGLFPKSDKQTSTADMLDLAVDYIKDLQQQVKVLTDCKAKCKCTSNEKHYTRTCS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01623 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 397 IPR011598 GO:0046983
Cca10g01623 425 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 417 - -
Cca10g01623 425 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 417 - -
Cca10g01623 425 Pfam Helix-loop-helix DNA-binding domain 353 398 IPR011598 GO:0046983
Cca10g01623 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 413 IPR036638 GO:0046983
Cca10g01623 425 Gene3D - 349 420 IPR036638 GO:0046983
Cca10g01623 425 SMART finulus 353 403 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01623 Cca-Chr10 27944931 27948270 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g01623 HLH 6.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01623 10 27944931 27948270 Cca04g01927 04 37532350 37537541 ECH
Cca10g01623 10 27944931 27948270 Cca10g01623 10 27944931 27948270 ECH