Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01599 ATGAGTGACACAGGAAGTGCAGCTCCAAGCGTGGAGCCAACCCACTATGTTTCACCATTCAATAGGAGCCTTTTCCCTTCAGATTTTGTGTTTGGATTAGGTTCTTCTGCCTACCAGGTAGAAGGAGCTCCAAATGTAGATGGCAGAGGAGCATGTATATGGGACACCTTCACCAATCAGCATCCGGAAAAGATTCGGGATCATAGCAGTGGTGACCTAGGAGCTGGTTTATATCATCACTACAAGGGCAAAGGAGCTATTAATCCCATGGGGGTTAAATTCTACAACAATCTCATCAATGAGGTCATATCAAATGGCTTAATACCTTTTGTCACTCTTTTCCATTGGGACTTCCCACAAGATCTTGAAGATGAGTATGGGGGATTTCGTAGTCCAAAAGTAGTGGTGGATTTTCGTGACTATGCTGACTTCTGCTTCAATACCTTTGGAGACCGAGTGAAACATTGGGTGACTCTGAATGAACCCTTATCATTTAGTCTCAATGGCTACAATGGTGACTCCTTTGCACCAGGTAGACGTTCTAAGTATGCTGGAAATTGCAGTTTTGGTGACTCAGCCACTGAACCCTACATTGTTGGCAGGGACGGAGTTTATATTAAAAATATGACAGCCACATTGTACAAGACAAAATATCAGGCTCATCAAAAAGGACAAATTGGGATCACCAATCCGACTCACTACTTTTTGCCTAAATCTAAGAGTGTTGCGGATTACAAGGCTGCAAATCGAGCTCTGGACTTCTTCTTTGGTTGGTATGTGTATAATCACCCGGTTATATATGATGATTATCCAGAGAGTATGAGATCTTTAGTGGGTGCTAGACTCCCCAAATTCACAAAAGATGAATCTGAAAGACTCAAAAGGTCCATTGATTTTCTTGGTGTGAATTATTACACTGCATATTATGCAGAACCTGCTAAACCTGTCAGTGCCAACAAGACCTTCTACACAGATATGCAAGTCGCCCTCACTATGGAAAAGAAAGGTGTAGCTATTGGCACCCCGGGTTTTTTCATTTTTTTCTCCCCCTTTCCTTTTCTTCCAACTCCACCTTCAAACACCGTCTACTATTACCGTCGCCGTTGCCGCGTGCAGGTCCAGCCAGAACGTTCACAGGCGTGCCTCCGCTGTCCACCGGCGCGCCTCCGCTATCCACCCGCGGCAGAACGTCCACCGACGCGCCTCTGCTGTCCACCTGCGGCAGAACATCCACCTCCGTTGTCCACCGACACGCCTCCGCTGTCCACCCACACGCTGCCGCCGTCCAACCGCACGCCTCCGCCGTCCTCCGCCGCGCCTCCTTCAGTTTACAAAAGTAAGCAACCGTTGCTTAGTAAAGCAACCCTCTCTCATCTACAAGAAACTCTTGCTGCCACCTGA 1401 0.4718 MSDTGSAAPSVEPTHYVSPFNRSLFPSDFVFGLGSSAYQVEGAPNVDGRGACIWDTFTNQHPEKIRDHSSGDLGAGLYHHYKGKGAINPMGVKFYNNLINEVISNGLIPFVTLFHWDFPQDLEDEYGGFRSPKVVVDFRDYADFCFNTFGDRVKHWVTLNEPLSFSLNGYNGDSFAPGRRSKYAGNCSFGDSATEPYIVGRDGVYIKNMTATLYKTKYQAHQKGQIGITNPTHYFLPKSKSVADYKAANRALDFFFGWYVYNHPVIYDDYPESMRSLVGARLPKFTKDESERLKRSIDFLGVNYYTAYYAEPAKPVSANKTFYTDMQVALTMEKKGVAIGTPGFFIFFSPFPFLPTPPSNTVYYYRRRCRVQVQPERSQACLRCPPARLRYPPAAERPPTRLCCPPAAEHPPPLSTDTPPLSTHTLPPSNRTPPPSSAAPPSVYKSKQPLLSKATLSHLQETLAAT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01599 466 Pfam Glycosyl hydrolase family 1 82 320 IPR001360 GO:0004553|GO:0005975
Cca10g01599 466 SUPERFAMILY (Trans)glycosidases 15 328 IPR017853 -
Cca10g01599 466 Gene3D Glycosidases 5 348 - -
Cca10g01599 466 PANTHER GLYCOSYL HYDROLASE 85 343 IPR001360 GO:0004553|GO:0005975
Cca10g01599 466 PANTHER GLYCOSYL HYDROLASE 14 82 IPR001360 GO:0004553|GO:0005975
Cca10g01599 466 PANTHER BETA-GLUCOSIDASE 17 14 82 - -
Cca10g01599 466 PANTHER BETA-GLUCOSIDASE 17 85 343 - -
Cca10g01599 466 MobiDBLite consensus disorder prediction 395 449 - -
Cca10g01599 466 MobiDBLite consensus disorder prediction 398 418 - -
Cca10g01599 466 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 29 43 IPR033132 -
Cca10g01599 466 MobiDBLite consensus disorder prediction 426 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01599 Cca-Chr10 27152173 27167997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01599 20 340 Glycoside Hydrolase AT5G42260 46.439 1.04e-100 309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01599 10 27152173 27167997 Cca04g01648 04 25930492 25938377 PCT