Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01477 ATGGGTCACCGTTGCTGCAGCAAACAAAAGATCAAAAGAGGGTTATGGTCTCCAGAAGAAGATGAGAAACTTATAAGATACATCAACACACATGGACATAAAAGTTGGAGTTCTGTGCCAAAATTTGCAGGCTTGCAGAGATGTGGGAAGAGTTGCAGATTGAGATGGATTAATTATCTGAGACCTGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCATAATTGACATTCATAGAATTCTTGGAAACAGATGGGCACAGATAGCCAAACACCTACCAGGAAGAACAGACAATGAGGTCAAGAATTTCTGGAACTCCTGCATAAAAAAGAAGCTCATATCTCAAGGGTTAGATCCACAAACTCACACTCTTCTCTCTTCTCATAGGAGAAGCTCAGCATGTACCATCTCCAACATTCATCAAAATTCCAATTCCATTTTCATTGTGAGTTCAAATATACCAAATGCACCCGTGGAAACTACTAGTCAAACCTTTTCTTCACTACCTAAAGCTCAACCAAACATTGTTCAAACTCCCTCTAGCATTGTTTCCTCTGAATATCAAACATCAACTATTCTTTCAAATAAATTCTCATCAGATTTGCCTTATGAGCTATTACTGGAGAACACCTCCAACATTTGTTCACCTTCATATATGAACCCCGAAGCAGTTGAATTGTCCAACTATGAGAACAATGTGAATTGGGTTTCAAGAGTTAATGTTGAAGATTTCAGTGCTCAAACACCGGAAGAGGGAACACAAGTGCAGGTGCATCAAGAGAAGAACAAGACTTGTGAGAGTAAGGGGATTGATGTTAGAGAAGTTAATAACAAGGGCAATCTTGAAACCAGTGCTTCTTTCGAGAGTTCTAACTTTGATTTTGGGTTGTTGGAGAGTGTACTTACCTCCGAATTTATCTCTCATGATTTCAACTGTATGGATGAACTTGCATGGAACTTTTAG 972 0.394 MGHRCCSKQKIKRGLWSPEEDEKLIRYINTHGHKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRSSACTISNIHQNSNSIFIVSSNIPNAPVETTSQTFSSLPKAQPNIVQTPSSIVSSEYQTSTILSNKFSSDLPYELLLENTSNICSPSYMNPEAVELSNYENNVNWVSRVNVEDFSAQTPEEGTQVQVHQEKNKTCESKGIDVREVNNKGNLETSASFESSNFDFGLLESVLTSEFISHDFNCMDELAWNF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01477 323 CDD SANT 68 108 IPR001005 -
Cca10g01477 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Cca10g01477 323 SMART sant 65 113 IPR001005 -
Cca10g01477 323 SMART sant 12 62 IPR001005 -
Cca10g01477 323 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Cca10g01477 323 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Cca10g01477 323 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Cca10g01477 323 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Cca10g01477 323 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Cca10g01477 323 CDD SANT 16 60 IPR001005 -
Cca10g01477 323 Gene3D - 10 66 - -
Cca10g01477 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Cca10g01477 323 PANTHER MYB DOMAIN PROTEIN 55 1 311 - -
Cca10g01477 323 PANTHER BNAC05G40480D PROTEIN 1 311 - -
Cca10g01477 323 Gene3D - 67 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01477 Cca-Chr10 23113790 23115508 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g01477 Myb_DNA-binding 2.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01477 10 23113790 23115508 Cca10g01477 10 23113790 23115508 ECH