Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01466 atggagagaATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGACTCCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGGCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCTTCTTCTGCCATTATTGGCCGCAACATGAACGAGATGCAAATCGAGGTGCAGAGAAGACTGCATGAACAACTCGAGGTTCAGAAACACCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATGCAAAGCATATTGGAGAAGGCTTATCAAACACTTGCTGGTGAAAACATGGCTTCTGCTGCCACAAACTTAAAGGGTACTATGTTGCCTCATCAAGGAATCCCTGACATGGGAGTGATGAAGGAGTTTGGTTCCCCTCTTAGTTTTTCTTCTTTTCAAGACCTTGACAACATTTATGGAGGTGACCAAATTGACCTTCAGCAGAACATGGAGAAGCCACCCCTTGATCATGGTTTTATGCCAATGAATGAGAGTTTGTGTCTTGGGAAGAAGAGGAACAGCAACAACCCTTATAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTTCAAGACTTGGGGGGGCCAGCATCATCATGCCTTGGCCCTCAAGATGACCCTTTCAAAGGTGACCAGATTCAGATTGCACCACCAGGGTCATTGGATAGAGGCACCACCACTGACATTGATCCAATGTCAGAGATCTATGACTCAAAGCCTGTGATTCAGGGTGAAGCTGTGGTGGGGGAGAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCTTCACCAAGAAGAGCACCTCTTCAGGCTGAAAGAATGAGTCCTATGATCAGTACTGGTACCATGGCACAAGGTAGAGGCTCACCATTTGGATGA 1128 0.4663 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAIIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGTMLPHQGIPDMGVMKEFGSPLSFSSFQDLDNIYGGDQIDLQQNMEKPPLDHGFMPMNESLCLGKKRNSNNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDQIQIAPPGSLDRGTTTDIDPMSEIYDSKPVIQGEAVVGEKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01466 375 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Cca10g01466 375 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Cca10g01466 375 MobiDBLite consensus disorder prediction 336 350 - -
Cca10g01466 375 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g01466 375 MobiDBLite consensus disorder prediction 336 375 - -
Cca10g01466 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 323 - -
Cca10g01466 375 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Cca10g01466 375 Gene3D - 34 92 - -
Cca10g01466 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 323 IPR044848 GO:0003700
Cca10g01466 375 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Cca10g01466 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01466 Cca-Chr10 22741193 22743766 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca10g01466 Myb_DNA-binding 2.1e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01466 10 22741193 22743766 Cca10g01466 10 22741193 22743766 ECH
Cca10g01466 10 22741193 22743766 Cca04g01672 04 27087629 27090510 PCT