Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01459 ATGGCTGCACCGAACCTTAGCCGCATGGCGTTTCGATCCTCGAAGCTTCTTGCTCGTCCTTCGCATCTTCTCTCTGCTCAGTTACTGATGCAGATGCAGTCCCCTTCTCCTCTCACTCGAAAGGCATGCCCCTTTATTATCGTGGATGCACATAGTGTTGCTTCCCAGCTCAATAGTTCTGGATTGTTGAGGACTCAGGGCCTTATTGGAGGGAAATGGAGTGATGCTTATGATGGCAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATTGTAGATATTGCATGCATGGGTGGAAGAGAGACAAATGATGCAATTTCTGCAGCCTATGATGCATATAGATCATGGAGCAAAACAACTGCTGCTGAGCGAAGCAAATTTCTGAGGAAATGGTATGATTTGCTAATGGTACATAAAGAAGAGCTTGCACAACTTATAACCTTGGAGCAAGGGAAACCTCTCAAGGAGTCTATTGGTGAGATAAACTATGGGGCTGGCTTCATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTTTATCTGATCGGCGATTATTTGTTCTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCAATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAACCCTCTGAACTTACACCTCTCACTGCATTAGCTGCAGCAGAACTCTCCATTCAAGCTGGAATACCAGCGGGTGTAGTGAATGTGGTAATGGGAAACGCACCTGATATTGGAGACGCTTTGATTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCAACAGCTGTTGGAAAGAAGTTGATGGCTGGTTCTGCTGAGACGGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCTTGCATAGTTTTTGATGACGCTGACCTGGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCAAATAGAATTATTGTGCAAGAAGGTATATATGAGAAATTTGCAAATGCTTTGCGTGATGCTGTTCAGAATATGAAAGTTGGGGATGGTTTTAGTGAAGGTGTGGCACAGGGGCCTCTGATCAATGAAGCCGCTGTCAAAAAGGTATGTTCTGACTATTCAATTCATTTTTATCTGAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGATTCACTTTCTATGAACCAACAGTCATCAGTGATGTCAACAGTGAGATGCGCATATCAAGAGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATAAGAATTGCTAATGACACTAACGCAGGTAGTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTTGAATATGGACTTGTGGGTGTTAATGAAGGAGTAATTTCAACCGAGGTGGCTCCATTCGGTGGTTATAAACAGTCTGGCCTCGGAAGAGAAGGCTCCAAATATGGGATGGATGAATATTTAGAGATCAAGTATGTGTGTTTGGGAAACATGAACAAAGAATGA 1629 0.4352 MAAPNLSRMAFRSSKLLARPSHLLSAQLLMQMQSPSPLTRKACPFIIVDAHSVASQLNSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESIVDIACMGGRETNDAISAAYDAYRSWSKTTAAERSKFLRKWYDLLMVHKEELAQLITLEQGKPLKESIGEINYGAGFIEFAAEEAKRIYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPDIGDALIASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQEGIYEKFANALRDAVQNMKVGDGFSEGVAQGPLINEAAVKKVCSDYSIHFYLKGAKVILGGKRHSLGFTFYEPTVISDVNSEMRISREEAFGPVAPLLRFKTEEDAIRIANDTNAGSLGSYIFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGYKQSGLGREGSKYGMDEYLEIKYVCLGNMNKE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01459 542 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 336 347 IPR016160 GO:0016491
Cca10g01459 542 CDD ALDH_F5_SSADH_GabD 84 536 - -
Cca10g01459 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 79 528 IPR016162 GO:0016491
Cca10g01459 542 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 84 532 IPR010102 GO:0009013|GO:0009450
Cca10g01459 542 SUPERFAMILY ALDH-like 60 540 IPR016161 GO:0016491
Cca10g01459 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 503 IPR016163 GO:0016620
Cca10g01459 542 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 308 315 IPR029510 GO:0016491
Cca10g01459 542 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 60 539 - -
Cca10g01459 542 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 60 539 - -
Cca10g01459 542 Pfam Aldehyde dehydrogenase family 75 534 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01459 Cca-Chr10 22388894 22409302 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01459 10 22388894 22409302 Cca10g01459 10 22388894 22409302 ECH