Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01450 ATGGAAACAAGAAGAGTGAGAAAGAATGTTGGGATACTTCTCCTCTACCTCACTTTGGCTTCCATTTCTCTCACTCATTGTGATGCAGATAGATCAATGAGACTATTGTTGAAAGGCCCTAGACATAGGAGAAATACAATGAACAAGAACCCAAAGAAGTTGAAAGTGGTGAAGCATTTTGATGTGAATAATAATAATAATCCAACTATATTCTCATCAAATGTTCAACCCTATAGTCTTAGCTCCCCATTTTCCTTGCCCCCTTATGAATCACTGGCTCCAATCCCATTGCCAGAAAACAGCCCTCCATTTTGTGTGTTCCCACCACCAAGTACCACCACCATCCCTACACCCATAGGCCTTCAACCAAGCCCTCCAAGCCCAATAACCATAACACCAGGCCCACCAGGGTCCTTCCCCCCAGAAATTGTCCCAGGCCCACCCACTATCATCCCAGGCTCACCCGAGCCCATACTCAATCCTCCCATCATTATCACACCAAGCCCACCTGACTCCTCAATGGGCCCACCCTACTTTGAACCCAGCCCACCTTACTTTGAGCCCACCCCACCTTCCATCATCCCTTCCCCCACAGGTGGCATCACCCCAGGCCCACCAACTACCGTCCCATCCCCCACAGAAGGCACTCTCCCAAGCCCACCAACTACCATCCCAACCCCCACTGGGGGCACTCTCCCAAGCCCACCAAGCACTGTTCCATCCCCCACTGAGGGCTCTGTCCCAAGCCCAAGTGTGTTTCAGCCACCAGTAGTGTACCCTCCACCAAGTGTGCCACCACCACCCAACTATGCCCCAAGGACCACCCTGTGGTGTGTGGCTAAGCCCTCAGTCCCAGACCCAATCATCCAAGAGGCCATGAACTATGCTTGTTGGTCAGGAGCAGATTGCACCTCCATTCAGCCCAATGGGCCGTGCTATCAGCCCGACACTGTGTATGCACATGCTTCGTACGCTTTCAATAGCTACTGGCAAAGGACCAAAGGTGCTGGTGGCAATTGCGAGTTTGGAGGCACAGCCATGCTTGTTGCAGTTGATCCTAGCTACGATGGGTGTCGCTTCATCTACAACTGA 1092 0.5183 METRRVRKNVGILLLYLTLASISLTHCDADRSMRLLLKGPRHRRNTMNKNPKKLKVVKHFDVNNNNNPTIFSSNVQPYSLSSPFSLPPYESLAPIPLPENSPPFCVFPPPSTTTIPTPIGLQPSPPSPITITPGPPGSFPPEIVPGPPTIIPGSPEPILNPPIIITPSPPDSSMGPPYFEPSPPYFEPTPPSIIPSPTGGITPGPPTTVPSPTEGTLPSPPTTIPTPTGGTLPSPPSTVPSPTEGSVPSPSVFQPPVVYPPPSVPPPPNYAPRTTLWCVAKPSVPDPIIQEAMNYACWSGADCTSIQPNGPCYQPDTVYAHASYAFNSYWQRTKGAGGNCEFGGTAMLVAVDPSYDGCRFIYN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01450 363 Pfam X8 domain 276 347 IPR012946 -
Cca10g01450 363 Gene3D - 272 361 - -
Cca10g01450 363 SMART X8_cls 276 360 IPR012946 -
Cca10g01450 363 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 205 363 - -
Cca10g01450 363 PRINTS Proline rich extensin signature 86 98 - -
Cca10g01450 363 PRINTS Proline rich extensin signature 102 118 - -
Cca10g01450 363 PRINTS Proline rich extensin signature 124 136 - -
Cca10g01450 363 PRINTS Proline rich extensin signature 136 157 - -
Cca10g01450 363 PRINTS Proline rich extensin signature 180 197 - -
Cca10g01450 363 PRINTS Proline rich extensin signature 200 225 - -
Cca10g01450 363 MobiDBLite consensus disorder prediction 170 243 - -
Cca10g01450 363 MobiDBLite consensus disorder prediction 170 253 - -
Cca10g01450 363 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 205 363 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01450 Cca-Chr10 22180177 22182464 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01450 10 22180177 22182464 Cca10g01450 10 22180177 22182464 ECH