Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01443 ATGCACAAGTTGGGGAGAGGTAATCGCGACAAACTCCAGCAGTTCGTAACAATAACTGGAGCCAGTGAGAAATTGGCACTGCAGGCTCTGAAGGCTAGTGATTGGCATCTTGAAGGAGCATTTGATTTCTTTTACAGCCAACCCCAGCTTAAAACATTTACTGATTCTAGACACTTGGAGGAGCTATACAATAGATATAAAGATCCATATGTTGATATGATTTTGGCGGATGGTATCACTCTCCTTTGCAATGATATCCAGGTGGATCCTCAAGATATAGTTATGTTAGTTCTTTCATGGCACATGAAGGCTGGCACCATGTGTGAATTTTCCAAGAAGGAGTTTATCGAAGGTTTACAATCTTTGGGGATTGATTCTCTGGAAAAATTCCGTGAAAAGATACCACATATGCGCTCTGAGCTGAAAGATGATCAGAAATTCCGTGAGATATATAACTTCGCTTTTGGCTGGGCAAAAGAAAAGGGTCAAAAATCTCTTGCACTGGATACAGCTATTGGCATGTGGCAATTATTATTTGCTGAGAAGCAGTGGCCACTGGTTGATCATTGGTGCCAGTTCTTGCAGGCTCAGCATAACAAAGCAATATCTAGGGACACATGGTCTCAGCTTTTGGAGTTTGCAAAGACTGTTGGCTCAAATTTATCTGATTATGATGCTGAAGGTGCTTGGCCATATCTTATTGATGAATTTGTGGAATATCTGAACGAGAATGGCGTCATCCAAAGTGGTCTGATCAATGATTCTACTCTAAAACGATGA 780 0.4115 MHKLGRGNRDKLQQFVTITGASEKLALQALKASDWHLEGAFDFFYSQPQLKTFTDSRHLEELYNRYKDPYVDMILADGITLLCNDIQVDPQDIVMLVLSWHMKAGTMCEFSKKEFIEGLQSLGIDSLEKFREKIPHMRSELKDDQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAQHNKAISRDTWSQLLEFAKTVGSNLSDYDAEGAWPYLIDEFVEYLNENGVIQSGLINDSTLKR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01443 259 PANTHER RP42 RELATED 13 248 IPR014764 -
Cca10g01443 259 Pfam UBA-like domain 9 47 - -
Cca10g01443 259 SUPERFAMILY UBA-like 8 46 IPR009060 GO:0005515
Cca10g01443 259 Gene3D - 53 142 - -
Cca10g01443 259 Gene3D Cullin, PONY binding domain 143 249 IPR042460 -
Cca10g01443 259 Gene3D - 7 47 - -
Cca10g01443 259 ProSiteProfiles DCUN1 domain profile. 54 242 IPR005176 -
Cca10g01443 259 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 13 248 - -
Cca10g01443 259 CDD UBA_DCNL 8 48 - -
Cca10g01443 259 Pfam Cullin binding 130 240 IPR005176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01443 Cca-Chr10 21945637 21952195 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01443 10 21945637 21952195 Cca10g01443 10 21945637 21952195 ECH