Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01436 ATGTTGAGGGTGTTTAGCAGTGCCTCGAGTTGTAGTTTAAAATCCAAGGGATTACAGAAGAGTGTATTTGGTGCTTCAATTCCATGTGAATCAATAGTCTTACAAAACTGCAATGCTCGTGGCATTCAGCCTATTAAAGCCACAGCAACTGAAATCCCTCTTCCCACCCAGAAATCAAGGAGCATTGGGAAGACGAGAGTTGGAATAAATGGTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTCCCGAGATGATATTGATGTTGTTGCAATTAATGATCCATTTATTGATGCAAAATATATGGCTTACATGTTCAAATATGATTCTACTCATGGTCCATTCAAGGGGACCATTACGATTCTGGATGACTCTACTTTAGAAATTAATGGGAAGGTGGTTAAAGTTGTGAGTAAAAGAGATCCTGCAGAGATCCCATGGAGTGATTTTGGGGCTGATTATGTCATTGAGTCTTCAGGAGTTTTTACAACACTTGAGAAAGCTTCATCACATTTGAAGGCTGGTGCCAAGAAAGTCATAATATCAGCTCCATCTGCGGATGCACCAATGTTTGTGGTAGGAGTGAATGAGAAGACATACCACCCAAGAATGGACATTGTTTCTAATGCAAGCTGTACAACGAATTGTCTTGCTCCTCTTGCCAAGGTGGTTCATGAAGAGTTTGGAATAGTTGAAGGTTTGATGACAACTGTACATGCAACAACAGCAACACAAAAGACCGTAGATGGCCCTTCTATGAAGGATTGGCGAGGGGGAAGAGGGGCAGGTCAAAATATAATTCCAAGTTCAACTGGTGCTGCAAAGGCTGTTGGGAAAGTTCTTCCTGAGCTAAATGGTAAACTCACTGGAATGGCTTTCCGTGTACCGACTCCCAATGTTTCTGTAGTGGACTTGACTTGCCGGCTTAAGAAGAATGCTTCCTATGAAGATGTTAAAGCAGCAATAAAGTTTGCCTCAGAGGGCCCACTGAAAGGAATCCTTGGGTACACAGAAGAGGATGTTGTCTCTAATGACTTTGTTGGTGATTCAAGGTCAAGCATATTTGATGCTAAGGCTGGCATTGCACTTGGTGCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAACGAGTGGGGTTACAGCAATCGAGTGTTGGACCTTATAGAACATATGGCATTGGCAAAGAGTGCATTTCCAGGGGTTTATCCAGAACCAGTCCATTTGACTCTTTACAGTTCCTCTTCACTCTGTACTAACTTCTCCGTTTCTGAGTTTTCTCAGGGAGTGTGCTCAAAGTAG 1305 0.4253 MLRVFSSASSCSLKSKGLQKSVFGASIPCESIVLQNCNARGIQPIKATATEIPLPTQKSRSIGKTRVGINGFGRIGRLVLRVATSRDDIDVVAINDPFIDAKYMAYMFKYDSTHGPFKGTITILDDSTLEINGKVVKVVSKRDPAEIPWSDFGADYVIESSGVFTTLEKASSHLKAGAKKVIISAPSADAPMFVVGVNEKTYHPRMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLKKNASYEDVKAAIKFASEGPLKGILGYTEEDVVSNDFVGDSRSSIFDAKAGIALGASFVKLVSWYDNEWGYSNRVLDLIEHMALAKSAFPGVYPEPVHLTLYSSSSLCTNFSVSEFSQGVCSK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01436 434 Gene3D Dihydrodipicolinate Reductase; domain 2 214 380 - -
Cca10g01436 434 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 16 396 IPR020831 GO:0016620
Cca10g01436 434 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 212 219 IPR020830 GO:0016620
Cca10g01436 434 SMART gp_dh_n_7 65 214 IPR020828 GO:0051287
Cca10g01436 434 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 64 230 IPR036291 -
Cca10g01436 434 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 213 376 - -
Cca10g01436 434 Gene3D - 66 393 - -
Cca10g01436 434 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 66 166 IPR020828 GO:0051287
Cca10g01436 434 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 332 347 IPR020831 GO:0016620
Cca10g01436 434 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 235 251 IPR020831 GO:0016620
Cca10g01436 434 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 292 309 IPR020831 GO:0016620
Cca10g01436 434 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 173 186 IPR020831 GO:0016620
Cca10g01436 434 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 208 226 IPR020831 GO:0016620
Cca10g01436 434 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 219 376 IPR020829 GO:0016620
Cca10g01436 434 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 66 388 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cca10g01436 434 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 16 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01436 Cca-Chr10 21791314 21803522 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01436 10 21791314 21803522 Cca10g01436 10 21791314 21803522 ECH