Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01432 ATGGACCAACCCCAACTCTTACACGACCCAACCTTCCCACTCTTCAAAATCCCAAGCAAAACCCCACCCAAACCCCCCTCACTCCccaccgccgccgccaccgccaccgccaccgTCGCCGCCGCCGAGCGCGTCGAAACCCCCGACGCTGACGCCGACACCTTCGAAGACCTCGGGCTCGCGGAATGGGCGGTGACGACGTGCCGGGAGCTCGGGATGCGGAAGCCGCGGCGCGTGCAGCAGCGGTGCATCCCGCGGGTGCTGGAGGGCCGCCACGTGCTAGGCATCGACGAGACCGGCAGCGGGAAGACGGCGGCCTTCGCGCTCCCCATCCTGCACCGCCTGGCCGAGCACCCCTTCGGCGTCTTCGCCCTCGTCGTCACGCCCACGCGCGAGCTCGCGTTCCAGCTCGCCGAGCAGTTCCGCGCGCTCGGCTCCGCCGTGCGCCTCCGCATCGCGGTGGTCGTCGGCGGCATGGACATGCTCCGGCAGACGAAGGAGTTGGCCGCGAGGCCGCACCTCGTCATCGCCACCCCTGGCAGGATTCACCTCTTGCTCCGCGATAACCCTGATATTCCTCCTGTTTTCTCCAGAACTAAGTACCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGAAGAATTGAAGTTTATTTTTCAATGCTTACCAGAAAATCGGCAAAATCTTTTCTTTTCTGCAACAACTACAAGTAATCTGCAGAAGTTGCGTGATCGTTACCGAGATAAGATGTATGTCTTTGAGGCATATGAAGGCTTTAAAACAGTTGAAACACTTAAGCAACAGGTTATATTCATTCCTAGAAAGGTGAAGGATGTATATTTGATGCACATTTTGTCTAAAATGGAAGATATGGACATTCGGTCTGCCATCGTATTTGTCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTTGAAGTGCTTGATCAAGAAGCAGCAGCTCTATATTCATTCAAATCACAAGCTCAGAGGCTTGAAGCACTTCATCAATTTAAATCAGGAAAGGTTTCTGTACTGCTTGCTACTGATGTTGCTAGTCGCGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATTCATCGTGTAGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCGTGAAATTGAAGCTCTTATTGAGCGGCAACTTGAAATGATTGAGTACAAGGAAAATGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCGGAAATGAAGATGATAGATGATGGCTTTGAGGATAAAGCTAAAGAGCGGAAAAAACAGAAGCTGAAAATGCTAGCAGAGAAAGGATTGTTAAAGAAAAGAAGTAAAAAGAGAAAACGAAATAAAGAGTTTGCAGAGGAAGGGGAAGAACAAAAAAAACAGGTTTTCAGTGCTAAGGATGTGGCAGAAATGAAGATGACGGTAGAGGAGGGCATTGGGAAGAAAGCAAAAAAAGGGGGTAAACAAAAACTGAAAATGCCAACAGAGAAAGGTTTGTTaaagaaaaaaaaagttgaaggaaagaaataa 1638 0.4731 MDQPQLLHDPTFPLFKIPSKTPPKPPSLPTAAATATATVAAAERVETPDADADTFEDLGLAEWAVTTCRELGMRKPRRVQQRCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVRLRIAVVVGGMDMLRQTKELAARPHLVIATPGRIHLLLRDNPDIPPVFSRTKYLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRDRYRDKMYVFEAYEGFKTVETLKQQVIFIPRKVKDVYLMHILSKMEDMDIRSAIVFVSTCRDCHRLSLMLEVLDQEAAALYSFKSQAQRLEALHQFKSGKVSVLLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIREIEALIERQLEMIEYKENEALSLMKKVFSAKNVAEMKMIDDGFEDKAKERKKQKLKMLAEKGLLKKRSKKRKRNKEFAEEGEEQKKQVFSAKDVAEMKMTVEEGIGKKAKKGGKQKLKMPTEKGLLKKKKVEGKK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01432 545 Pfam DEAD/DEAH box helicase 78 246 IPR011545 GO:0003676|GO:0005524
Cca10g01432 545 Pfam Helicase conserved C-terminal domain 293 392 IPR001650 -
Cca10g01432 545 MobiDBLite consensus disorder prediction 1 30 - -
Cca10g01432 545 SMART helicmild6 311 392 IPR001650 -
Cca10g01432 545 SMART ultradead3 72 272 IPR014001 -
Cca10g01432 545 MobiDBLite consensus disorder prediction 476 496 - -
Cca10g01432 545 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 53 81 IPR014014 GO:0003724
Cca10g01432 545 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 52 485 - -
Cca10g01432 545 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Cca10g01432 545 Gene3D - 30 257 IPR027417 -
Cca10g01432 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 412 IPR027417 -
Cca10g01432 545 CDD DEADc_DDX49 55 258 - -
Cca10g01432 545 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 431 IPR001650 -
Cca10g01432 545 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 84 257 IPR014001 -
Cca10g01432 545 Coils Coil 409 429 - -
Cca10g01432 545 MobiDBLite consensus disorder prediction 515 545 - -
Cca10g01432 545 CDD SF2_C_DEAD 269 401 - -
Cca10g01432 545 Gene3D - 264 532 IPR027417 -
Cca10g01432 545 PANTHER RNA HELICASE 52 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01432 Cca-Chr10 21212402 21219617 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01432 10 21212402 21219617 Cca10g01432 10 21212402 21219617 ECH