Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01429 ATGGATGGAAGTCGAGCGCAAAACGCCGAATCCAAGCCCTTCTCTGTCGCATTCGCGGAGGGAGAATCCTCAAACACCGCCGCGGACAAACAAGAAAACCAATCCGATGTTAACCTCAAAACCTCGGACGGCGTGGTGTTCGAGGTCAAAGCCTCGATCGCGAAGCAGATGCAGACAGTGCAGTCCTTCATCGACACCAGCGGAGACAGCACCACCGTGATCCCGCTCCCCAACGTGACCAGCCGTGACCTCTGCCGCATCCTGAAGTACTGCGAGGAGCACCGCCGCATCGGCCACGACAAGGAGGCGCTGAAGGAGTTCGACGACAATTTCATGAAGGCGCTGAGCCACGACGAGATGAAGGAGCTCCTTTTCGCGGCGAACTACCTCAACGTGAAGGAGTTTTTTGATTTTGTTTGCCGCGGAATCGCCCAGATGCTGCAGAACAAGAGCGTGGAGTTTGCCAGAGATTTCTTCGGCATCGTGAGCGACTTCACACTCGAGGAGGAGGTGTCGTATCGCGAAGCCAACGCCTGGGCGTTCGAGAACATTGATGACAATTTTCCATCAATGGCAGTAGAAGACCTTTGGAAAGAATTGGCGGAAGTAGAGCGCAAACTCGCTGAAGCCGAATCCAAGCCCTTATCGGTCGCACTCGCGGAGGAGCAGCTCAACAGCCTCACCCTATCCGAGGGAGAATCCTCAAACACTGCCGCCGTCGACGAACAAGAAAACCAACCCGACGTTAACCTCAAAACCTCGGACGGCGTGGCGTTCGAGGTCAAAGCCTGGATCGCGAAGAAGATGGAGACGGTACAGTCCTTCATCGACACCAGCGGAGACAGCTCTGCCGTGATCCCGCTCCCCAACGTGACCAGTCGCGACCTCCGCCGCATTCTGAACTACTGCGAGGAGCACCGCCGCATCGGCTTCCACGACAAGAAGGCGCTGAAGGAGTTCGACGACAATTTCATGAAGGCGCTGAGCCCCGACGAGATGAAGGAGATTCTTCTCGCTGCGAACTACCTCAACATGAAGGAGTTTCTTGATTTTCTTTGCTGCGGAATCGCCGAGATGCTGCAGAACAAGAGCGTGGAGTTCGCCAGAGATTTCTTCGGCATCGTGAGTGACTACACTCCCGAGGAGGAGGCTGCGTATCGCGAAGCCAACGCCTGGGCGTTCGAGAACATCGACGACAATAGTAGTTAG 1209 0.5575 MDGSRAQNAESKPFSVAFAEGESSNTAADKQENQSDVNLKTSDGVVFEVKASIAKQMQTVQSFIDTSGDSTTVIPLPNVTSRDLCRILKYCEEHRRIGHDKEALKEFDDNFMKALSHDEMKELLFAANYLNVKEFFDFVCRGIAQMLQNKSVEFARDFFGIVSDFTLEEEVSYREANAWAFENIDDNFPSMAVEDLWKELAEVERKLAEAESKPLSVALAEEQLNSLTLSEGESSNTAAVDEQENQPDVNLKTSDGVAFEVKAWIAKKMETVQSFIDTSGDSSAVIPLPNVTSRDLRRILNYCEEHRRIGFHDKKALKEFDDNFMKALSPDEMKEILLAANYLNMKEFLDFLCCGIAEMLQNKSVEFARDFFGIVSDYTPEEEAAYREANAWAFENIDDNSS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01429 402 MobiDBLite consensus disorder prediction 1 35 - -
Cca10g01429 402 SUPERFAMILY Skp1 dimerisation domain-like 104 179 IPR036296 GO:0006511
Cca10g01429 402 PANTHER SKP1 248 396 IPR016897 GO:0006511
Cca10g01429 402 PANTHER SKP1 35 183 IPR016897 GO:0006511
Cca10g01429 402 Pfam Skp1 family, tetramerisation domain 249 307 IPR016073 GO:0006511
Cca10g01429 402 Pfam Skp1 family, tetramerisation domain 37 95 IPR016073 GO:0006511
Cca10g01429 402 MobiDBLite consensus disorder prediction 18 35 - -
Cca10g01429 402 MobiDBLite consensus disorder prediction 230 249 - -
Cca10g01429 402 Pfam Skp1 family, dimerisation domain 134 180 IPR016072 GO:0006511
Cca10g01429 402 Pfam Skp1 family, dimerisation domain 346 393 IPR016072 GO:0006511
Cca10g01429 402 PANTHER SCF UBIQUITIN LIGASE, SKP1 COMPONENT 35 183 - -
Cca10g01429 402 PANTHER SCF UBIQUITIN LIGASE, SKP1 COMPONENT 248 396 - -
Cca10g01429 402 Gene3D Potassium Channel Kv1.1; Chain A 34 183 IPR011333 -
Cca10g01429 402 Gene3D Potassium Channel Kv1.1; Chain A 245 395 IPR011333 -
Cca10g01429 402 SUPERFAMILY Skp1 dimerisation domain-like 317 392 IPR036296 GO:0006511
Cca10g01429 402 SMART skp1_3 34 132 IPR001232 GO:0006511
Cca10g01429 402 SMART skp1_3 246 345 IPR001232 GO:0006511
Cca10g01429 402 Coils Coil 193 213 - -
Cca10g01429 402 SUPERFAMILY POZ domain 249 307 IPR011333 -
Cca10g01429 402 SUPERFAMILY POZ domain 37 95 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01429 Cca-Chr10 21148077 21151184 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01429 10 21148077 21151184 Cca10g01429 10 21148077 21151184 ECH