Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01368 ATGCCCCTCTCTCCTTCTTCCATGGCTTCAATCCCTCAGTTCTATCCAAACTACACGTTCACCACTCATGATCTTCAGGAGTTTCCCACACCACTCAATGGCAACGCCTCAGTGATGGACAACGCCATGTGGGGTGCTCAAGATAGCTTGATTCCTGTGCTTGACATGAACAATGGTGCACTTGATCATATTGTGTCACTTGATTGTGATGCCATGGCTTGTGCTAATTGGATGCCTTCGTTCTCTGAGCAACTTGGGGGGCTCTCTGACTTGGCCATTTCGGACTGCAAAATGGGCTTCTATGGAGGGTTTCAGAATTTCAACTCCAGATACCAACCACATGTTGGGGAGTTTGGAGAAGAATGTTGTGGGTTTGTGGAGGATATTAAGCCACCTGCTTATCCTAATACTGCCAGAGAAAATTGGGGAATTCAGGGTAATCAAATGGCAGCAGTTGAGGAGCCTAACATAAAGGTAGGAAGGTACTCAGAAGAAGAAAGGAAAGAGAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTGAGGGTTAGGGGAAGGTTTGCAAGAAACAATGAGCTATGTGAAGAAGACATGGCAACAAAAAAGCATGAGAATGATCATCATCACAAAGAAGACTTCTACGGTGGTGATTCAATCCAGTTCCAGTTAAAGAATGACGAGGAGGATTGGCTTCAAGAGGCTATGGCAAGTCTAGTTTATTTATCTCATTCTTCACCGGAAGACATGTAA 807 0.4387 MPLSPSSMASIPQFYPNYTFTTHDLQEFPTPLNGNASVMDNAMWGAQDSLIPVLDMNNGALDHIVSLDCDAMACANWMPSFSEQLGGLSDLAISDCKMGFYGGFQNFNSRYQPHVGEFGEECCGFVEDIKPPAYPNTARENWGIQGNQMAAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDMATKKHENDHHHKEDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01368 268 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 8 263 - -
Cca10g01368 268 Pfam CCT motif 167 209 IPR010402 GO:0005515
Cca10g01368 268 PANTHER ACTIVATOR OF SPOMIN::LUC2 8 263 - -
Cca10g01368 268 ProSiteProfiles CCT domain profile. 167 209 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01368 Cca-Chr10 19194757 19196951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01368 163 217 C2C2-CO-like Transcription Factor Family AT5G57660 47.273 2.90e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca10g01368 CCT 8.2e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01368 10 19194757 19196951 Cca10g01368 10 19194757 19196951 ECH