Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01367 ATGAAGGAGAGTGGTAGAAAACAAGGTACAATGTCGCCATGTGCTGCATGCAAGCTTCTAAGAAGGAGATGCACGAGGGATTGCGTGTTTGCTCCTTATTTTCCTGTTGATGAACCCCAGAAATTTGGTAGTGTTCACAAGGTTTTCGGGGCTAGCAATGTGAACAAAATGTTACAGGAATTACCTGAACACCAAAGAAGTGATGCTGTTAGTTCGATGGTATATGAAGCAAATGCAAGAGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTTCAGCAACAAGTTGATGTGCTCCAAACCCAATTGGCACTTGCACAAGCAGAGGTTGTGCACATGAGAATGCGCCAATACTcaacaccatcatcagatcaacaacaacaacaacaacCCTCATCAGTGCCTCATGAAGCCTCCAATTCATCCTCAGAGAACTTGTACGAATCAAGCAGGCTCTTGACTTCGAATACCAAGTCCCTTTTTGGCATGGACATGGTCGTTGATCAGGCCAACAACATGGGCCAATCCTTGTGGTCATACTAG 552 0.4293 MKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPVDEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQYSTPSSDQQQQQQPSSVPHEASNSSSENLYESSRLLTSNTKSLFGMDMVVDQANNMGQSLWSY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01367 183 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cca10g01367 183 Coils Coil 92 112 - -
Cca10g01367 183 MobiDBLite consensus disorder prediction 119 152 - -
Cca10g01367 183 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cca10g01367 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 152 - -
Cca10g01367 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01367 Cca-Chr10 19178519 19183297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01367 1 182 AS2 family AT1G31320 63.243 3.38e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca10g01367 LOB 1.1e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01367 10 19178519 19183297 Cca10g01367 10 19178519 19183297 ECH