Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01329 ATGGCGAAGCCTGGGCGAGGTCGTCGCTCACCCTCCGGTTCCGCTTCCGGCTCCTCGCGCTCCTCTTCCCCCTCCGATTCTCGCTCCTCCTCTcgctcccgctccctctcccgctcccgctccccctcgcgctccAGATCCTTCTCTTCTTCCTCGTCTTCTCCTTCCCGCAGTTCGCGCAGCCGCAGTCCTCCGCCGCAGAGGCGCCGAAGTCCTGTTGAAGGAGCTAGGCGAGGGCGGTCTCCTCCACCACTGTCTAAGAGAACTTCTCCTCCTCCAAGGAAACCTTCTCCTGTACGCGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGAAATGTCAATGAAGGCCATTTGAAAGAGATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGCTGGCAATGGATCGAACAGTTAATCTTCCAAAAGGATATGGATATGTGCAGTTCAAGACAAGAGGGGATGCAGAAAAAGCATTGTTATACATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACCCTACCTCCAAGGCAGAAAGTTTCACCACCCCCAAAGACTTCTGCTGTTGCTCCAAAGAGAGACACCCCCAGGACTGATAATGCTAATGCAGATATTGACAAGGATGGGCCAAAGCGTCAAAGAGAATCTTCTCCTCGTAGAAAACCTCTTCCCTCCCCGCGGAGGAGGTCTCCTATTCCTCGAAGAGCTGGATCTCCAAGAAGACCAGATTCTCCTCGCCGACGTCCAGATTCTCCTGTCCGTCGCCGATTAGACTCTCCTTATCGTCGTGGAGGAGACACACCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGACGCCTTAGGTCCCCTGGAAGGGTTTCTCCCAGAAGGTTGCGTGGAAGCCCAGGTCGGAGACGATCACCTCCTCCTCCTCCAAGGCGCCGATCACCACCTAGACGAGCTCGAAGTCCTCCTAGAAGGTCCCCATTGGGTCGTAGACGGACTCGCTCTCCAATACGGAGGTCTGCACGCTCACGGTCAAGATCATTTTCACCTCGCAGAGGTAGACCACCTGTTAGACGTGGGAGGTCATCATCCTATTCTGATTCACCAAGTCCGCGCAAGGTAACCCGGAGATCAAAGAGTCGCAGCCCAAGAAGGCCTTTGAGAGGAGGAAGAGgcagtagcaacagcagcagcagcagcTCCCCACCACCAGCTCGCAAACCATAG 1254 0.5088 MAKPGRGRRSPSGSASGSSRSSSPSDSRSSSRSRSLSRSRSPSRSRSFSSSSSSPSRSSRSRSPPPQRRRSPVEGARRGRSPPPLSKRTSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKTSAVAPKRDTPRTDNANADIDKDGPKRQRESSPRRKPLPSPRRRSPIPRRAGSPRRPDSPRRRPDSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPGRVSPRRLRGSPGRRRSPPPPPRRRSPPRRARSPPRRSPLGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVTRRSKSRSPRRPLRGGRGSSNSSSSSSPPPARKP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01329 417 MobiDBLite consensus disorder prediction 11 66 - -
Cca10g01329 417 MobiDBLite consensus disorder prediction 297 367 - -
Cca10g01329 417 Gene3D - 8 187 IPR012677 -
Cca10g01329 417 MobiDBLite consensus disorder prediction 180 417 - -
Cca10g01329 417 MobiDBLite consensus disorder prediction 1 101 - -
Cca10g01329 417 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 401 - -
Cca10g01329 417 CDD RRM_RNPS1 105 177 IPR034201 -
Cca10g01329 417 MobiDBLite consensus disorder prediction 398 417 - -
Cca10g01329 417 SUPERFAMILY RNA-binding domain, RBD 91 189 IPR035979 GO:0003676
Cca10g01329 417 MobiDBLite consensus disorder prediction 245 275 - -
Cca10g01329 417 SMART rrm1_1 104 177 IPR000504 GO:0003723
Cca10g01329 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Cca10g01329 417 MobiDBLite consensus disorder prediction 203 228 - -
Cca10g01329 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Cca10g01329 417 PANTHER BNAA09G56240D PROTEIN 1 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01329 Cca-Chr10 18296974 18302937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01329 105 178 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 2.66e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01329 10 18296974 18302937 Cca10g01329 10 18296974 18302937 ECH