Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01324 ATGTTAGAAACGTGGCTGGTTGTGGTCGCTGCTGAATTCAAATCCCTACTTGAAGTTGAAAATTCGTCACTGGattcattcattcatcatcatttttctacttcaatcatGGCTTCACTCCTCAACACGGTGTCACCAGCCGCAAATTTACCCTCCAAAACGAAACGAGCCTGTTGCCGCGGTTTCTTGCACTTCCAGGTCCCAAAAATTCACACTTTTTCCCTCAAGAAGGGTTTTTCTAGGGTTTGGGTTTCGACCCAGGTTGCCATTTCCCCAAAAGATTCCATCTTTACCCTCCCCAATTGGAGGAGTGGGAGGAATGACCAAAGGGGCAAAGAGCTGAGGATGTATGATGCATTTCTCCACTTAGAGTACATGGTGGGTAAGGGCCACAAGCCTGAGGTTACTCAAGCAACTCAGCTTTTGTATGATCTTTGCAAATTCAATAAGGCTAGGAAAGCTGTTAGGGTTATGGAGATGATGGTTGGTTCAGGTATTATACCTGATGCAGCCTCTTATACTCACTTGGTCAATTTTTTGTGTAAGAGAGGCAATGTTGGCTATGCAATTCAGTTGGTTGAGAAGATGGAGGGGCATGGCTTTCCAACCAATACTGTTACCTATAACACCCTTGTTAAAGGGCTTTGTATGCATGGGAACTTGAATCAGAGCTTGCAGCTTTTGGATAAGCTGACAAAGAAGGGCCTTGTCCCGAATGCATTCACGTTTTCCTTCCTTCTCGAGGCGGCATATAAGGAAAGGGGTGTGGATGATGCTATGAAGCTTCTGGATGATATAATTGCCAAGGGTGGGGAGCCTAACTTGGTTAGTTACAATGTGTTATTGACTGGTTTGTGCAAGGAAGGGAGGACTGAAGAAGCTGTCAAGCTTTTTCGGGAATTGCCTGCGAAAGGGTTCAGTCCTAGTGTTGTGAGTTACAACATTTTGCTGAGGAGTTTGTGCTACGAGGGGCGGTGGGAGGAGGCGAACAAGCTTCTGGCAGAGATGGATAAAGAGAACCAGACTCCCTCGGTGGTTACTTACAACATATTGATTACTTCGCTTTGCCTCCATGGAAGAACCGAACAAGCTTTCAAGGTTTTAGATGAAATGATGAGGAGTGGGTTCAAGGCGACTGCTACTAGCTATAATCCGATCGTTGCCCGCCTCTGCAAGGAAGGGAAGGTGGATCTTGTTTACCAGTGTCTGGACCAAATGATTCACAGGCGCTGTAATCCTAATGAAGGAACATACTGTGCTATCGCGATGCTGTGTGAGCAAGGTAACGTGCAGGAGGCTTTCTTTCTAATCCAAAGCCTGGGAAATAAACAAAACTACCCTATGCATGATTTTTACAAGAATGTGATTGCAAGTCTGTGTAGGAAAGGGAACACATATCCAGCTTTTCAGGTGCTATATGAAATGACAAAGTATGGATTTACTCCAGATTCCTATACTTATTCATCTTTGATAAGAGGAATGTGTAGGGAGGGAATGCTAGATGAGGCTCTAAAGATATTCAGGATTTTGGAAGAAAATGAACACAGGCCTGATCTTGATAACTACAATGCACTCATACTTGGATTTTGCAAAGCTCAGAGAACAGACTTGTCAATAGAGATATTAATGATGATGGTTAACAGAGGATGTGTGCCTAATGAGACAACCTATACCATTCTTGTGGAAGGGCTTGCTTTTGAAGAGGAAACAGATATAGCAACCGATCTGTTGAAAGAGTTATATGTGAAAGAGGTTCTGAGCCAAAGTACTGTTGAAAGACTTTGTATGCAATATGACCTCAAGGAGTTAATAGCAACAGGGTAG 1824 0.4309 MLETWLVVVAAEFKSLLEVENSSLDSFIHHHFSTSIMASLLNTVSPAANLPSKTKRACCRGFLHFQVPKIHTFSLKKGFSRVWVSTQVAISPKDSIFTLPNWRSGRNDQRGKELRMYDAFLHLEYMVGKGHKPEVTQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDKLTKKGLVPNAFTFSFLLEAAYKERGVDDAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAVKLFRELPAKGFSPSVVSYNILLRSLCYEGRWEEANKLLAEMDKENQTPSVVTYNILITSLCLHGRTEQAFKVLDEMMRSGFKATATSYNPIVARLCKEGKVDLVYQCLDQMIHRRCNPNEGTYCAIAMLCEQGNVQEAFFLIQSLGNKQNYPMHDFYKNVIASLCRKGNTYPAFQVLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENEHRPDLDNYNALILGFCKAQRTDLSIEILMMMVNRGCVPNETTYTILVEGLAFEEETDIATDLLKELYVKEVLSQSTVERLCMQYDLKELIATG 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01324 607 Gene3D Tetratricopeptide repeat domain 109 221 IPR011990 GO:0005515
Cca10g01324 607 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Cca10g01324 607 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Cca10g01324 607 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Cca10g01324 607 TIGRFAM PPR: pentatricopeptide repeat domain 485 518 IPR002885 -
Cca10g01324 607 TIGRFAM PPR: pentatricopeptide repeat domain 172 202 IPR002885 -
Cca10g01324 607 TIGRFAM PPR: pentatricopeptide repeat domain 522 554 IPR002885 -
Cca10g01324 607 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Cca10g01324 607 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Cca10g01324 607 Pfam PPR repeat 382 411 IPR002885 -
Cca10g01324 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Cca10g01324 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Cca10g01324 607 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 603 - -
Cca10g01324 607 Pfam PPR repeat family 273 321 IPR002885 -
Cca10g01324 607 Pfam PPR repeat family 518 565 IPR002885 -
Cca10g01324 607 Pfam PPR repeat family 204 249 IPR002885 -
Cca10g01324 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Cca10g01324 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Cca10g01324 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Cca10g01324 607 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 37 603 - -
Cca10g01324 607 SUPERFAMILY TPR-like 188 435 IPR011990 GO:0005515
Cca10g01324 607 Gene3D Tetratricopeptide repeat domain 341 408 IPR011990 GO:0005515
Cca10g01324 607 Gene3D Tetratricopeptide repeat domain 419 602 IPR011990 GO:0005515
Cca10g01324 607 Gene3D Tetratricopeptide repeat domain 222 340 IPR011990 GO:0005515
Cca10g01324 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Cca10g01324 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Cca10g01324 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Cca10g01324 607 Pfam PPR repeat 165 197 IPR002885 -
Cca10g01324 607 Pfam PPR repeat 479 508 IPR002885 -
Cca10g01324 607 Pfam PPR repeat 342 371 IPR002885 -
Cca10g01324 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01324 130 605 Glycosyltransferase AT1G05670 25.673 8.90e-48 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01324 10 18139266 18141296 Cca10g01324 10 18139266 18141296 ECH