Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01314 ATGAGCAACATAAGCATGGTAGAGGCAAAGCTTCCACCAGGATTCAGGTTCCATCCAAGAGATGAAGAACTTGTGTGTGATTACTTGATGAAGAAGGTGACACACAATGATTCCCTTCTCATGATAGATGTTGACCTTAACAAGTGTGAACCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAGGAATGGTATTTCTACACACAAAGAGACCGTAAGTATGCAACAGGGCTACGCACAAATCGTGCCACTGCTTCAGGGTATTGGAAGGCCACAGGGAAGGACAGACCTATCCTTCGTAAGGGCACCCTTGTTGGTATGAGAAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGAAAAACTGAGTGGGTCATGCATGAATTTCGTATTGAAGGCCCACATGGACCTCCTAAAATTTCTTCTTCCAAGGAGGATTGGGTTTTGTGTAGGGTGTTCTACAAGAACAGAGAAGTTGCAGCCAAACCTAGCATGGGTAGCTGCTATGAGGACACAGGCTCTTCATCTCTTCCTGCATTGATGGACTCATACATAAGTTTTGACCAAACACAAACCCAAACCCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGAACCACCAAACAAGTCCCATTTTCAACCACATGGCCACTACCATGGAGCCCAAGTTACCTGCAGCCAACCATGTAAGTGCCTATGGAGGAGCACCAAACCTGGGTTACTGCTTAGACCCTTTTTCCTGTGACAGAAAAGTGTTGAAAGCTGTTTTGAGTCAAATCACAAAGATGGATAGGAATCCTCTTAACCAAAGTCTAAAAGGGTCACCAAGCTTAGGAGAAGGAAGCTCAGAGAGTTACTTATCTGAAGTGGGGATGCCCCACATGTGGAACAATTACTGA 924 0.4545 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHNDSLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREVAAKPSMGSCYEDTGSSSLPALMDSYISFDQTQTQTHADEFEQVPCFSIFSQNHQTSPIFNHMATTMEPKLPAANHVSAYGGAPNLGYCLDPFSCDRKVLKAVLSQITKMDRNPLNQSLKGSPSLGEGSSESYLSEVGMPHMWNNY 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01314 307 MobiDBLite consensus disorder prediction 274 293 - -
Cca10g01314 307 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Cca10g01314 307 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 303 - -
Cca10g01314 307 MobiDBLite consensus disorder prediction 274 292 - -
Cca10g01314 307 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Cca10g01314 307 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 303 - -
Cca10g01314 307 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Cca10g01314 307 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01314 Cca-Chr10 18035108 18040364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01314 2 305 NAC Transcription Factor Family AT1G56010 60.815 3.52e-129 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g01314 NAM 1.3e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01314 10 18035108 18040364 Cca10g01314 10 18035108 18040364 ECH