Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01303 ATGTTAATTTTGGTGGGAAACGTGCAGGGAACAATGAGTTCTCTTGCTTCTCCAGTGAGTTTGGGGGGCCTCATGGGTGTGAGTTCCTCTAGAAGGTCCCATTCTTTGGTGAGGAGAGTCTCTCTTTCAAGAGGGAACTGTAAGGGGAGAAAGAGATGGCATTGTGTATCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGGAATTCATTGTCCCTTGATTCTAACagtagtagtagtagtagtaataAGGGTGGAGATGATGGCGCTGGTTTTGTGCTTAAGCCTCCCCCTAAGCCTGTGTTGAAGGCCCCAGACAATAGGAGTGACCCCATTTTGGGGCCCTCAAGGGCTACTGGGGATGTGGAAGAGAGGAATAAGGTGATTGAATCGCTTGGGGAGGTGTTGGAGAAGGCGGAAAAGCTTGGGAATTCTAAGGTGAATGGTGAAAGGGATAATGGTTCTGTGAATAAACCGGTGAGGAATAATGCAGATGCTAATCCTAAGGCTGATAAGCCGGTGAATTCAGTAGCAACTCAGAAATCTAAAACCTTAAAGAGTGTATGGCGTAAAGGGGACACGGTTGCGGCAGTGCAGAAGGTTGTGAAGGAAATACCAAAGCCTAATATCAAGACTGAAGAGGAGAAGTCTCAAACAAGGGGAGGGGAGAAGGTGGTTTCACAAACTCGTGCTCCTCAATCGCCTTCGAAGCCTCAACCGCCTTCAAAACCTCAACCGATGCTGCAAATGAAACCTTCTATAGCTCCCCCACCTGTCAAAAAACCCATTGTCCTGAGGGATAAGGGAGCTGCTGAAACATCAGATAAGTCTAAAGAAAAGAAGTCACCCATCTTGATTGATAAGTTTGCTACCAAGAAATCTGTAGTTGATCCTCTAATTGCACAAGCAGTTCTAGCTCCTTCAAAACCAGGGAAGGCACCTCCCCCGGGAAAGTTTAGAGATGATTACCGGAAGAAAGGTGCTCCAGCTGGGGGACCAAGAAGACGGATTTTAgaggatgatgatgatgatgtgattcatgatgaggaCACATCAGAACTCAATGTCTCTATTCCTGGTGCTGTAGCAGCAAGAAAAGGTAGAAAATGGAGTAAAGCAAGTCGAAAGGCTGCAAGACTCCAGGCTGCCAGGGATGCAGCTCCTGTCAGAGTAGAAATTCTAGAGGTTGGTGAAAAAGGTATGCTGGTGGAGGAATTAGCCTACTCTTTGGCAACAAGTGAAGGTGAAATCCTGGGTTATCTGTACTCCAAGGGAATTAAGCCAGATGGGGTACAAACAATAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTATGATGTGGAAGTGATAGATGCTGATCCTGTCAAGGTTGAAGGTTTAGCGAAGAAAAGGGAAATTCTTGATGAAGAAGATCTCAATAAACTCAAAGATAGGCCTCCTGTTATTACTATTATGGGTCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGAATCACACAAGGAATTGGGGCCTATAAAGTGCAAGTACCTGTTGATGGCAAGCAGTTGCCCTGTGTTTTCCTTGATACTCCTGGGCATGAGGCATTTGGAGCAATGAGAGCTCGTGGAGCAAGTGTGACAGACATTGCTATTATTGTTGTGGCTGCCGATGATGGAATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCTATAAACAAGATAGATAAAGATGGAGCAAACCCAGAAAGAGTCATGCAAGATCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTGACATCCCAATGGTTCCGATAAGTGCTCTTAAAGGGAAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTTGCCGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCGAAGGGAACAGTCATTGAGGCAGGGCTAGATAAATCAAAGGGACCTTTTGCTTCATTTATTGTGCAGAATGGCACCCTTAGACGTGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGAGGGCTTTATTTGATGACAGTGGAAAGCGGGTTGATGAAGCTACACCCTCTATACCTGCACAGGTTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAATCCCTTGATACTGCACGTGAAAGGGCAGAGGCTCGTGCTGAGTCGTTGCGAAATGAACGTATTTCAGCAAAGGCAGGGGATGGCAAAGTCACCCTTTCTTCCTTAGCTTCGGCAGTTTCGTCTGGAAAGCTGTCTGGACTGGACTTGCATCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTCAGAAAAGCTCTGCAGGTGCTACCACAAGACAATGTCACTCTGAAGTTTTTGTTGGAAGCAACAGGTGATGTAAGCACAAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTTTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGCAGAGAACAAAGCTGTTGAGATTAGATTATATAGAGTTATTTATGAATTAATTGATGATGTACGAAATGCAATGGAAGGGCTCCTAGAACCAGTTGAGGAACAAGTAACAATTGGCTCGGCACAAGTACGAGCTGTGTTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTCAATGAGGGAAAGGTAGTAAAAGACTGTGGTATTCGAGTCAAGCGGAAGGGAAAAATAGTTCATGTTGGTATTCTTGATTCTTTGAGACGAGTGAAGGAGATTGTTAAAGAGGTAAGTGCTGGTCTTGAGTGTGGGCTTGGTTTAGAAGACTTTGATGATTGGGAAGAGGGTGACATTCTTGAAGCCTTCAACACAGTTGAGAAGAAGAGGACCCTTGAGGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTTCATTGTAG 3045 0.4384 MLILVGNVQGTMSSLASPVSLGGLMGVSSSRRSHSLVRRVSLSRGNCKGRKRWHCVSLSVCRYSVTTTDFVADQGNSLSLDSNSSSSSSNKGGDDGAGFVLKPPPKPVLKAPDNRSDPILGPSRATGDVEERNKVIESLGEVLEKAEKLGNSKVNGERDNGSVNKPVRNNADANPKADKPVNSVATQKSKTLKSVWRKGDTVAAVQKVVKEIPKPNIKTEEEKSQTRGGEKVVSQTRAPQSPSKPQPPSKPQPMLQMKPSIAPPPVKKPIVLRDKGAAETSDKSKEKKSPILIDKFATKKSVVDPLIAQAVLAPSKPGKAPPPGKFRDDYRKKGAPAGGPRRRILEDDDDDVIHDEDTSELNVSIPGAVAARKGRKWSKASRKAARLQAARDAAPVRVEILEVGEKGMLVEELAYSLATSEGEILGYLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDADPVKVEGLAKKREILDEEDLNKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVQVPVDGKQLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQDLSSIGLMPEDWGGDIPMVPISALKGKNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFASFIVQNGTLRRGDIVVCGEAFGKVRALFDDSGKRVDEATPSIPAQVIGLNNVPIAGDEFEVVESLDTARERAEARAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALQVLPQDNVTLKFLLEATGDVSTSDVDLAVASKAIILGFNVKAPGSVKSYAENKAVEIRLYRVIYELIDDVRNAMEGLLEPVEEQVTIGSAQVRAVFSSGSGRVAGCMVNEGKVVKDCGIRVKRKGKIVHVGILDSLRRVKEIVKEVSAGLECGLGLEDFDDWEEGDILEAFNTVEKKRTLEEASASMAAAVEGVGVSL 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01303 1014 Gene3D Translation factors 899 995 - -
Cca10g01303 1014 Gene3D Translation factors 661 777 - -
Cca10g01303 1014 TIGRFAM small_GTP: small GTP-binding protein domain 487 648 IPR005225 GO:0005525
Cca10g01303 1014 PRINTS GTP-binding elongation factor signature 489 502 IPR000795 GO:0003924|GO:0005525
Cca10g01303 1014 PRINTS GTP-binding elongation factor signature 541 551 IPR000795 GO:0003924|GO:0005525
Cca10g01303 1014 PRINTS GTP-binding elongation factor signature 557 568 IPR000795 GO:0003924|GO:0005525
Cca10g01303 1014 PRINTS GTP-binding elongation factor signature 593 602 IPR000795 GO:0003924|GO:0005525
Cca10g01303 1014 Coils Coil 744 771 - -
Cca10g01303 1014 MobiDBLite consensus disorder prediction 76 132 - -
Cca10g01303 1014 CDD IF2_mtIF2_II 665 746 IPR044145 -
Cca10g01303 1014 TIGRFAM IF-2: translation initiation factor IF-2 407 996 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Cca10g01303 1014 MobiDBLite consensus disorder prediction 241 266 - -
Cca10g01303 1014 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 485 658 IPR000795 GO:0003924|GO:0005525
Cca10g01303 1014 MobiDBLite consensus disorder prediction 272 294 - -
Cca10g01303 1014 Pfam Elongation factor Tu GTP binding domain 490 650 IPR000795 GO:0003924|GO:0005525
Cca10g01303 1014 Pfam Translation initiation factor IF-2, N-terminal region 407 456 IPR006847 -
Cca10g01303 1014 MobiDBLite consensus disorder prediction 213 228 - -
Cca10g01303 1014 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 41 1004 IPR015760 -
Cca10g01303 1014 MobiDBLite consensus disorder prediction 150 294 - -
Cca10g01303 1014 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 41 1004 - -
Cca10g01303 1014 MobiDBLite consensus disorder prediction 313 345 - -
Cca10g01303 1014 Pfam Translation-initiation factor 2 793 886 IPR023115 -
Cca10g01303 1014 CDD mtIF2_IVc 904 986 - -
Cca10g01303 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 661 IPR027417 -
Cca10g01303 1014 Gene3D - 482 660 IPR027417 -
Cca10g01303 1014 ProSitePatterns Initiation factor 2 signature. 947 969 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Cca10g01303 1014 Gene3D - 793 898 IPR036925 -
Cca10g01303 1014 CDD IF2_eIF5B 488 654 - -
Cca10g01303 1014 SUPERFAMILY Translation proteins 900 994 IPR009000 -
Cca10g01303 1014 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 792 904 IPR036925 -
Cca10g01303 1014 MobiDBLite consensus disorder prediction 155 169 - -
Cca10g01303 1014 MobiDBLite consensus disorder prediction 76 93 - -
Cca10g01303 1014 MobiDBLite consensus disorder prediction 322 345 - -
Cca10g01303 1014 SUPERFAMILY Translation proteins 661 745 IPR009000 -
Cca10g01303 1014 Hamap Translation initiation factor IF-2 [infB]. 7 994 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01303 Cca-Chr10 17849067 17858440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01303 464 884 Eukaryotic Initiation Factors Gene Family AT1G76810 29.918 4.63e-30 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01303 10 17849067 17858440 Cca10g01303 10 17849067 17858440 ECH