Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01302 ATGGAGGATAATCAATGGTGTCTCTATGACCATGACCCACTTCTTCTCACAGACGTTTCTATGCAACAAGATTCCTCTTCTTATACTCACTGCTTCAATTCTCTTTCACAAACATCACTGAGCTCTCAGAGTTTGGCTATGGCGTATGAGCCTGCGTCTCGTGGTGACAGCCCCAGTATCGGGTTTTCTCGGGAAAACGGAAATTTTGAAGGGAACAGCGTGAAATTCGACGACCCGGTAGTGTCAAATGTGTTTCATGGAAGATCAATTTTGGGGTATTCTCTGACATCCCCAGATTTGGTCGTTTGTGCTGGCTCACCAGATATTGCCGGAATCAGCTATGGTGATTCCCCTGAGTTGTTGAAGAACAAACATTGCAAGAATGTGGATACATCTATGGAGCTTTCTCTAGATTATGGAATCAACGGGTCTCAAGTTGAAATTGACAATGGCCACAGGACCACAACTGTTAAATTCTCCAACTTTTGTCAAACTTTTGAGCAAGGGGAAGAACCACTATCCCCTGAAGCCTCCTTTGAGCTTCTTCCTCCCCTTTTAGCCAAGGATGAATCACCCCAAGATCACCCTCCTAGAGATAATGAGATGCTAGAAGATATTGGAGTGTCTCAGGAGGCAGAATTGGAGTCATCAGAAGATGCCGAGGATATTGAGGTGGAAGAGAAGTTTAAGAGGCTGAAAAGAGACTTTGAGTGTCAGAGAAAGGAGCTGGCAGAAACAAGGAAGGAGTTGGGTGAGGTCAAGAGGGAGAATCAACAAAAGAGTAGAGAATGCCAAGAAGCTTTGAATTCCTTGAAAGAGCTTCAGAATGAGCTAATGCGAAAATCCATGCACGTAGGATCTTTGGCATTTGCCATTGAGGGGCAAGTGAAAGAGAAAAGTAGGTGGTTTTCATCGCTGAGAGACTTGACAAGGAAATTGAAGATTATGAAAATGGAACACATCAAGCTATTAGAAGAAGCAGAGGCAAGCAAACAATATCAAGCAGATATGAGAGAAATGGGGCTTATTATCAACTCCAAAATGAATGAACAACTGGAGTCCCATGAAGACCTCATGTACAAATATATTGAAGGGGCTAAGGAACGGAAAGAGCTTTACAATAAGGTTTTGGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGTTGTAGGCCTCTCAATGCCGAAGAGATAGCCTCAGGAGCAACAATGGCCTTAGATTTTGAATCTGCGAAAGATGGTGAGCTAACTGTAATGTCAAATGGAGCTCCTAAAAAGACTTTCAAGTACGATGCTGTCTTTGGTCCCCAAGCTGAGCAAGCTGATATCTTTGAAGACACAGCACCATTTGCAACCTCAGTCCTAGATGGGTACAATGTATGCATTTTTGCATATGGGCAGACTGGGACAGGAAAAACTTTCACAATGGAGGGCACGGAAGAAGCTCGAGGTGTTAACTTCAGGACACTAGAAAAAATGTTTGACATAATCAAGGATAGACAGAAGCTCTACTGTTATGATATCTCTGTAAGTGTCTTAGAAGTGTACAATGAGCAAATAAGAGATTTGTTGGTTTCAGGAAATCATCCAGGAACAGCTGCAAAAAGACTTGAAATAAGGCAAGCTGGTGAAGGAATGCATCACATTCCAGGATTGGTCGAAGCACATGTGAACAATATGACTGAAGTTTGGGAAGTCCTACAAACTGGTAGCAATGCAAGGGCAGTAAGCTCAACCAATTCCAATGAGCATAGCAGCCGATCGCACTGTATTCACTGTGTTATGGTTAAGGGGGAGAATTTGTTGAATGGGGAATGCACAAGAAGTAAGTTATGGCTTGTGGACCTAGCAGGCAGTGAGCGAGTGGCAAAGACAGAAGTTCATGGTGATAGACTGAAGGAGACACAAAATATTAATAGGTCTCTGTCTGCACTTGGTGATGTCATATCTGCTCTTGCAACAAAAAGTTCACACATCCCTTTCAGGAACTCCAAACTTACACACTTGCTGCAAGACTCATTAGGAGGAGATTCGAAGACACTCATGTTTGTACAGATCAGTCCTAATGAAAATGATTTGAGTGAGACAATTTGCTCTCTGAACTTTGCTAGTAGAGTAAGAGGAATAGAATTAGGCCCTGCAAGAAAGCAGTTGGACACTCTTGAACTTTTGAGACACAAACAAATGGCTGAGAAAGTCAAACAAGAGGTAAAGCTGAAGGATTTCCAAATCAAGAAGATGGAGGAAACAATTCATGGATTAGAGTCCAAGATGAAGGAAAGAGATAGCAAAAACAAAAATCTGCAAGAGAAGGTCAAGGAACTAGAATCACAACTTTTGGTTGAGAGAAAGCTCGCACGTCAACATGTAGACTCAAAAATAGCTGAGCAGCACCAAATGAAACATCAAGAAGAGCAAAATAATACACTTATGAGAGCAGCACTTGCAAATAGACCACTAGGAAGTCTCAAGAATCTCAATGATCCAGTGAGTGGTGGGTGGTGCAAAGACCAACAAACAAATTCAGCTAGACCACTAGAGAACAACAACATATTGAAACCTTGTATACCCTTTTCTACAATGGAGAGCTCCATCAAGTGCATTGATCATGCTGAGAAAGAAAACAATCCTGACATGTCTGACAAAGCCCTACTGCCGAAAAGGCCTGGAAGAGCTTCTATCTGCATGATGACACCACGTGTTCCTTCAGCCATTGCTTCAAGGAGAAACTCATTGATTCCACTCCCAAGTATACCTAGCTTAACCCAGTTCCCATCACCATTAGTACCAAAGGTTACAAACCAAGTTGATCAGAAAGATGTCAATGGGGAATCAGAAACTAACTATGTGCCTGCACAGACTCATTGTGATAGTCCCAAAGAAGTTAGAAGTGGCGTTAAAAGGATAGGTAGCATACTAAGAAGAAGCCTGCACAAGAAAATACAGGTGAAGTCTCCTCTTCAGCAGCATATGAGGAAGGTTGGTGTAAATGTAGGGATGGAGAAAGTTAGAGTTTCCATTGGGAGTAGAGGGAGATTGGCACCTAGGGTGCAAGGTGCTGGTAAAAGAGGAGCAGCTAAAGATATTCAACAAAAGAATAGTCATAAGGAAAAGGAAAGGGGATGGATTTAA 3129 0.4238 MEDNQWCLYDHDPLLLTDVSMQQDSSSYTHCFNSLSQTSLSSQSLAMAYEPASRGDSPSIGFSRENGNFEGNSVKFDDPVVSNVFHGRSILGYSLTSPDLVVCAGSPDIAGISYGDSPELLKNKHCKNVDTSMELSLDYGINGSQVEIDNGHRTTTVKFSNFCQTFEQGEEPLSPEASFELLPPLLAKDESPQDHPPRDNEMLEDIGVSQEAELESSEDAEDIEVEEKFKRLKRDFECQRKELAETRKELGEVKRENQQKSRECQEALNSLKELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRKLKIMKMEHIKLLEEAEASKQYQADMREMGLIINSKMNEQLESHEDLMYKYIEGAKERKELYNKVLELRGNIRVFCRCRPLNAEEIASGATMALDFESAKDGELTVMSNGAPKKTFKYDAVFGPQAEQADIFEDTAPFATSVLDGYNVCIFAYGQTGTGKTFTMEGTEEARGVNFRTLEKMFDIIKDRQKLYCYDISVSVLEVYNEQIRDLLVSGNHPGTAAKRLEIRQAGEGMHHIPGLVEAHVNNMTEVWEVLQTGSNARAVSSTNSNEHSSRSHCIHCVMVKGENLLNGECTRSKLWLVDLAGSERVAKTEVHGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETICSLNFASRVRGIELGPARKQLDTLELLRHKQMAEKVKQEVKLKDFQIKKMEETIHGLESKMKERDSKNKNLQEKVKELESQLLVERKLARQHVDSKIAEQHQMKHQEEQNNTLMRAALANRPLGSLKNLNDPVSGGWCKDQQTNSARPLENNNILKPCIPFSTMESSIKCIDHAEKENNPDMSDKALLPKRPGRASICMMTPRVPSAIASRRNSLIPLPSIPSLTQFPSPLVPKVTNQVDQKDVNGESETNYVPAQTHCDSPKEVRSGVKRIGSILRRSLHKKIQVKSPLQQHMRKVGVNVGMEKVRVSIGSRGRLAPRVQGAGKRGAAKDIQQKNSHKEKERGWI 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01302 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 746 IPR027417 -
Cca10g01302 1042 Coils Coil 743 784 - -
Cca10g01302 1042 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 216 1029 - -
Cca10g01302 1042 MobiDBLite consensus disorder prediction 1027 1042 - -
Cca10g01302 1042 Gene3D Kinesin motor domain 377 752 IPR036961 -
Cca10g01302 1042 CDD KISc_C_terminal 380 710 - -
Cca10g01302 1042 SMART kinesin_4 380 716 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g01302 1042 ProSiteProfiles Kinesin motor domain profile. 382 708 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g01302 1042 Coils Coil 306 326 - -
Cca10g01302 1042 ProSitePatterns Kinesin motor domain signature. 608 619 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca10g01302 1042 Coils Coil 229 284 - -
Cca10g01302 1042 PRINTS Kinesin heavy chain signature 456 477 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g01302 1042 PRINTS Kinesin heavy chain signature 578 595 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g01302 1042 PRINTS Kinesin heavy chain signature 609 627 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g01302 1042 PRINTS Kinesin heavy chain signature 658 679 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g01302 1042 MobiDBLite consensus disorder prediction 1011 1042 - -
Cca10g01302 1042 Pfam Kinesin motor domain 388 708 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g01302 1042 PANTHER KINESIN-LIKE PROTEIN KLP-3 216 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01302 Cca-Chr10 17839930 17846051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01302 369 735 Calmodulin-binding Proteins AT5G65930 43.784 2.61e-82 290
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01302 10 17839930 17846051 Cca10g01302 10 17839930 17846051 ECH