Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01301 ATGCCCCATGTCCCAGATGCTCCAGTTGTGGGTCAACTTCTTGAACCTTCGGACCCACCTTCCCATCCTTTTAAATACAAAACCCCAACGTCCATGTCTCAACCCAAAACCACACACCAAGCCATGGACGAACCCACATTGCTCTTCCCAGACACAGACCTCGACCTCAGCTTCACCAGCACCGCCACCGACCGCACCACCACCACCACCAGCGCCCGCACCAGCCTCGCCCGCACCAGCAGCCTCACCCTCAGCTTCAACGACCGCCTCTCCACCGTCTCCACCGCCGCCGAATCCTCCTCCGCCTCCCTCAACCGCCGCCCCCACCGCTCCTCCGACCCCCTCTGGTCCGCCATCCAGGCCGCCACCACGCTCTCCTCCGACGGCCGCCTCCACCTCCGCCACCTCAAGCTCCTCCGCCACCTCGGCTCCGGCAACCTCGGCCGCGTCTTCCTCTGCCGCCTCCGCGACTGCGACGCCGCCGCCGCCACCTTCGCCCTCAAGGTCGTCGACAAGGACCTTCTCTCCCCCAAAAAACTCTCGCACGCGGAAACCGAAGCGGAAATCCTCCACGCGCTCGACCACCCCTTCCTCCCTACTCTCTACGCGCGCATCGACGTCTCGCACTACACGTGCCTCCTCATCGACTACTGCCCCGGCGGCGACCTCCACTCCCTCCTCCGCAAACAGCCTCACCACCGCCTCCCCCTCGCGGCGGCGCGTTTCTTCGCCGCCGAGGTCCTCCTCGCCCTCGAGTACCTCCACGCGCTCGGCATCGTCTACCGCGACCTCAAACCCGAGAACGTGCTCCTACGCGAAGACGGCCACGTAATGCTCTCAGATTTCGATTTATGCTTCAAATCCGACGTGGCACCCTCGTTCTCCCTCCGGGCCCACACGCGTAACAAACCCGGCCCCACAAACGGTTGTTTCAGTTACAACAGAAAAACCGACAGAGCAAGCACTTTCCTCGCGGAGTTCGTTGCCGAGCCGGTGACGGCGTTTTCACGGTCGTGCGTGGGGACGCACGAGTATCTGGCGCCCGAGCTGGTTTCGGGTAACGGACACGGTAACGGCGTGGACTGGTGGGCTTTGGGGGTTTTCATCCACGAGTTGTTGTACGGGACGACGCCGTTTAAGGGGTGCAGCAAGGAGGGGACGCTGAGGAACATCGCGTCGAGCGAAGGCGTGAGGTTCCGCCACGTGGCGGAACGGGAGGAGGCGGGGATGGGTGAGGCTAGGGATTTGATTGAGAAGTTGCTCGTGAAGGACCCTAGGAGAAGGCTTGGGTCTCTTAAGGGTGCCACTGATGTTAAACGACACGCGTTTTTCTATGGGATTAAGTGGCCTTTGATTAGGACTTACCGGCCACCGGAAGTTAAGGGATTGGTTCTCAAGAGAAACAAGTCCCACGTGACTACTGTCAAGAAGAGGAGGTGTTGGTGGAAGAGGCTTGGCCATGCTGTGAGGAGTAACGGGATCAGTACATATAATTTGTTTTCCCACTATAGTAATAATTATTATTATCATTATGTTCAAGATAGTCATAAGGTTAGGTAA 1560 0.5955 MPHVPDAPVVGQLLEPSDPPSHPFKYKTPTSMSQPKTTHQAMDEPTLLFPDTDLDLSFTSTATDRTTTTTSARTSLARTSSLTLSFNDRLSTVSTAAESSSASLNRRPHRSSDPLWSAIQAATTLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDCDAAAATFALKVVDKDLLSPKKLSHAETEAEILHALDHPFLPTLYARIDVSHYTCLLIDYCPGGDLHSLLRKQPHHRLPLAAARFFAAEVLLALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVAPSFSLRAHTRNKPGPTNGCFSYNRKTDRASTFLAEFVAEPVTAFSRSCVGTHEYLAPELVSGNGHGNGVDWWALGVFIHELLYGTTPFKGCSKEGTLRNIASSEGVRFRHVAEREEAGMGEARDLIEKLLVKDPRRRLGSLKGATDVKRHAFFYGIKWPLIRTYRPPEVKGLVLKRNKSHVTTVKKRRCWWKRLGHAVRSNGISTYNLFSHYSNNYYYHYVQDSHKVR 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01301 519 SUPERFAMILY Protein kinase-like (PK-like) 113 460 IPR011009 -
Cca10g01301 519 SMART serkin_6 136 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01301 519 Gene3D Phosphorylase Kinase; domain 1 135 221 - -
Cca10g01301 519 Pfam Protein kinase domain 138 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01301 519 ProSiteProfiles Protein kinase domain profile. 136 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01301 519 PANTHER SERINE/THREONINE-PROTEIN KINASE WAG1 50 475 - -
Cca10g01301 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Cca10g01301 519 Gene3D Transferase(Phosphotransferase) domain 1 337 460 - -
Cca10g01301 519 PANTHER FLIPPASE KINASE 1-RELATED 50 475 - -
Cca10g01301 519 Gene3D Transferase(Phosphotransferase) domain 1 222 288 - -
Cca10g01301 519 MobiDBLite consensus disorder prediction 24 39 - -
Cca10g01301 519 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01301 Cca-Chr10 17823470 17825199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01301 42 519 AGC Kinase Gene Family AT3G14370 63.158 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca10g01301 Pkinase 5.6e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01301 10 17823470 17825199 Cca10g01301 10 17823470 17825199 ECH