Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01299 ATGGATGAAGTAGTTCTTGTGGGGTTTTGGAGCAGCCCTTATGTGATGAGAGTGAAGATTGCACTGATAGAGAAGGGTGTTGAGTTTGTGTACAAGGAAGAAAAAGATATATTTGAGAAGAAGAGTGAGTTACTCCTGAAATCCAATCCCATTCACAAGAAGGTTCCAATTCTCATCCACCATGGTAGACCCATTTGTGAGTCCCTCATCATTCTTCAATACATTGATGAGGTTTGGAAGCAAGAAAAACAGCTTTTCTCTAATGATCCTTACGACCGAGCCAGAGCCAGGTTTTGGATTGATTTATTTGACAAGAAGGTAAGTGATTGTGGCAGGAGAATGTGGGCTAGCAAAGGGGCAGATCAAGATGCTGCAAAGAAAGAGTTTGTGGAGTGCTTGAAACTCTTGGAAAATGAACTTGGAGAAAAGCCTTATTTTGCTGGTGATTATTTTGGCCTTTTGGATATAGCCTTGCTACCAATTACATGCAGGTTTTATACATACGAGACATTTTGCAAATTTAGTGTGGAGAAAGAGTGCCCAAGGTTCATGGCTTGGGCCAAAAGGTGTAATCAGAGGGAGAGTGTTTCCATGACACTTCCTGACCCATATAAAGTCTATGACTTCACTTTGGAGGTTAAGAAAAGGCTTAAAATTGAGTGA 663 0.4087 MDEVVLVGFWSSPYVMRVKIALIEKGVEFVYKEEKDIFEKKSELLLKSNPIHKKVPILIHHGRPICESLIILQYIDEVWKQEKQLFSNDPYDRARARFWIDLFDKKVSDCGRRMWASKGADQDAAKKEFVECLKLLENELGEKPYFAGDYFGLLDIALLPITCRFYTYETFCKFSVEKECPRFMAWAKRCNQRESVSMTLPDPYKVYDFTLEVKKRLKIE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01299 220 Pfam Glutathione S-transferase, C-terminal domain 118 194 IPR004046 -
Cca10g01299 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 213 IPR045073 -
Cca10g01299 220 Gene3D - 89 220 - -
Cca10g01299 220 SUPERFAMILY GST C-terminal domain-like 77 216 IPR036282 -
Cca10g01299 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 217 IPR010987 -
Cca10g01299 220 CDD GST_N_Tau 4 79 - -
Cca10g01299 220 Gene3D Glutaredoxin 1 87 - -
Cca10g01299 220 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Cca10g01299 220 SFLD Main.3: Omega- and Tau-like 1 218 IPR045073 -
Cca10g01299 220 SFLD Main (cytGST) 1 218 - -
Cca10g01299 220 PANTHER GLUTATHIONE S-TRANSFERASE PARA-RELATED 4 213 - -
Cca10g01299 220 CDD GST_C_Tau 90 209 IPR045074 GO:0004364|GO:0006749
Cca10g01299 220 SUPERFAMILY Thioredoxin-like 4 106 IPR036249 -
Cca10g01299 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01299 Cca-Chr10 17783175 17784733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01299 2 217 Glutathione S-transferase Gene Family AT1G78380 54.630 4.86e-86 252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01299 10 17783175 17784733 Cca10g01299 10 17783175 17784733 ECH