Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01298 ATGTCGGTGGATGAGGTGGTTCTGTTGGATGCATGGGGCAGCATGTTTGGGATGAGGGCTAGGATTGCATTGGAAGAAAAGGGTGTTAAGTATGAACACAAGGAAGAGAATCTCAGCAACAAGAGCCCTTTGCTTCTGCAGATGAACCCTATTTACAAGCAAATTCCAGTTCTCATTCATAATGGCAAACCCATTTCTGAATCTGCCATTATTGTGCAGTACATTGATGAGGTTTGGAATCACAACACTCCAATCTTACCCTCTCATCCTTATGAAAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGGTGTATCCTACTTGGAACAAAATGTGGCGTTCTGAAGGAGAAGATCATGAGGCAGCAAAAAAGGAGTTGATCTCTATCTTTAAGCAACTAGAAGAGACATTGGGTGATAAAATCTTTTACGGGGGTGACACGTTTGGGTTTGTTGATGTTGGTCTCATCACTTTCTATTGTTGGTTTTATACTTTTGAGACATATGGCAATTTCAAAATGGAAGCAGAGTGCCCTAAACTCATTGCTTGGGCCAAGAGATGCATGCAGAGAGAAACTGTGTCCAAAATTATTCCTGATGAGAAGGAAGTGTATAATGCAGTTGTGGAAATGAAGAAGGAACTTGAATCGAAATAG 663 0.4103 MSVDEVVLLDAWGSMFGMRARIALEEKGVKYEHKEENLSNKSPLLLQMNPIYKQIPVLIHNGKPISESAIIVQYIDEVWNHNTPILPSHPYERAQARFWVDYIDKKVYPTWNKMWRSEGEDHEAAKKELISIFKQLEETLGDKIFYGGDTFGFVDVGLITFYCWFYTFETYGNFKMEAECPKLIAWAKRCMQRETVSKIIPDEKEVYNAVVEMKKELESK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01298 220 CDD GST_C_Tau 90 213 IPR045074 GO:0004364|GO:0006749
Cca10g01298 220 SUPERFAMILY GST C-terminal domain-like 77 211 IPR036282 -
Cca10g01298 220 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 5 214 - -
Cca10g01298 220 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Cca10g01298 220 Gene3D Glutaredoxin 2 88 - -
Cca10g01298 220 Gene3D - 89 219 - -
Cca10g01298 220 SFLD Glutathione Transferase (cytosolic) 4 219 IPR040079 -
Cca10g01298 220 CDD GST_N_Tau 6 79 - -
Cca10g01298 220 Pfam Glutathione S-transferase, N-terminal domain 7 77 IPR004045 -
Cca10g01298 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 214 IPR045073 -
Cca10g01298 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Cca10g01298 220 Pfam Glutathione S-transferase, C-terminal domain 121 194 IPR004046 -
Cca10g01298 220 SFLD Main.3: Omega- and Tau-like 4 219 IPR045073 -
Cca10g01298 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 217 IPR010987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01298 Cca-Chr10 17733353 17735497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01298 3 217 Glutathione S-transferase Gene Family AT1G78380 61.395 1.60e-101 291
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01298 10 17733353 17735497 Cca10g01298 10 17733353 17735497 ECH