Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01296 ATGGTGGAGGAGGACAAGGTAGTTTTGTTGGGCTCTGGGTTCAGTATGTTTGGGATGAGAGCTAAGATAGCTTTGGCAGAGAAAGGAATCAGATATGAATACATGGAAGAGGATCTTACCAACAAGAGCCCCTTGCTTCAAGAAATGAACCCAATTCACAAGAAAATTCCAGTTCTCATACATCAAGGGAAACCAATCTGTGAGTCCCTTATAATTGTTGAGTATATTGATATGGTTTGGCAACACAATTCTCCCTTGCTTCCCTCTGATCCCTATCATAGATCTCAAGCCAGGTTCTGGGCTGATTTTGTAGATCAGAAGGTGTATCATGCTTCTAGGAGGGTATGGATTTCAGAGGGACATGAGCAAGAAGTGGCAAAGAAGGACTTCATAGATAGCTTAAAGCAATTGGAAGGGTTTCTTGGAGACAAGCCTTATTTTGGAGGTGACACATTAGGGTTTGTTGATGTTGCTCTCATACCTTTTTATTGCTGGTTTTATACTTATGAGACCTTTGGCAACTTCAAAGTGGAGGCAGCGTGTCCAAAGCTTATCTCCTGGGCCAAGAGATGCATGAAGAAGGAAAGTGTATCTGAAACTCTTGCAGATGGGAAGGAGGTTTATGAGTCTGTGTTGGATTATAAGAAGAAATTTATATTGAACTAA 666 0.4129 MVEEDKVVLLGSGFSMFGMRAKIALAEKGIRYEYMEEDLTNKSPLLQEMNPIHKKIPVLIHQGKPICESLIIVEYIDMVWQHNSPLLPSDPYHRSQARFWADFVDQKVYHASRRVWISEGHEQEVAKKDFIDSLKQLEGFLGDKPYFGGDTLGFVDVALIPFYCWFYTYETFGNFKVEAACPKLISWAKRCMKKESVSETLADGKEVYESVLDYKKKFILN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01296 221 Gene3D Glutaredoxin 3 89 - -
Cca10g01296 221 CDD GST_C_Tau 91 214 IPR045074 GO:0004364|GO:0006749
Cca10g01296 221 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 6 214 - -
Cca10g01296 221 SUPERFAMILY GST C-terminal domain-like 81 218 IPR036282 -
Cca10g01296 221 Pfam Glutathione S-transferase, C-terminal domain 126 190 - -
Cca10g01296 221 SFLD Main (cytGST) 3 219 - -
Cca10g01296 221 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Cca10g01296 221 SFLD Main.3: Omega- and Tau-like 3 219 IPR045073 -
Cca10g01296 221 CDD GST_N_Tau 7 80 - -
Cca10g01296 221 Gene3D - 90 221 - -
Cca10g01296 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cca10g01296 221 Pfam Glutathione S-transferase, N-terminal domain 13 77 IPR004045 -
Cca10g01296 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 218 IPR010987 -
Cca10g01296 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 214 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01296 Cca-Chr10 17717722 17718994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01296 5 219 Glutathione S-transferase Gene Family AT1G78380 61.395 9.80e-101 289
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01296 10 17717722 17718994 Cca10g01296 10 17717722 17718994 ECH