Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01280 ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTTCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATCGCCTTCAGGGCTTTAATCAGCTCTCACCAACCCACTTTCTGGTCAGCACTAAGCCCTCTGCTGACGATAATTTCCCAAACAATCGAAGGAGAAGAAATGGTTTTAACCAAGGGAGGAGAAGGTTGAGTGGAAGATCACTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGATATTGATCAGCATGTGACTGAGGAGCGACTTGCAGCCTTATTCAGCAGTTGTGGGCAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTCGAGTTTGCAGATGAGTATGGTGCTAGGACTGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCAGTGAATCCTACATTCCTCCCTAGGTCAGATGATGAGCGCGAAATGTGTGCCCGGACTGTCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAGGTGAAGAATTTTTTTGAATCGGCTTGTGGTGAGGTTACGCGTCTGAGGCTTTTGGGGGACCATGTGCACTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAGAGTGCCATTATTGCACTTAACTGTAGTGGGATGCTCTTGGGAACCCAGCCTATAAGGGTAAGTCCTTCGAAGACTCCGGTGAGGCCAAGGGTCACTCGCCCGGCATCTCATTAA 891 0.4523 MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHRLQGFNQLSPTHFLVSTKPSADDNFPNNRRRRNGFNQGRRRLSGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVTRPASH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01280 296 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g01280 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 277 IPR000504 GO:0003723
Cca10g01280 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Cca10g01280 296 Pfam Ataxin-2 C-terminal region 32 47 IPR009818 -
Cca10g01280 296 SUPERFAMILY RNA-binding domain, RBD 72 184 IPR035979 GO:0003676
Cca10g01280 296 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 295 - -
Cca10g01280 296 MobiDBLite consensus disorder prediction 71 102 - -
Cca10g01280 296 CDD RRM2_CID8_like 204 285 IPR034825 -
Cca10g01280 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 186 IPR000504 GO:0003723
Cca10g01280 296 SMART rrm1_1 209 280 IPR000504 GO:0003723
Cca10g01280 296 SMART rrm1_1 112 182 IPR000504 GO:0003723
Cca10g01280 296 Gene3D - 196 290 IPR012677 -
Cca10g01280 296 Gene3D - 69 187 IPR012677 -
Cca10g01280 296 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 295 - -
Cca10g01280 296 SUPERFAMILY RNA-binding domain, RBD 199 290 IPR035979 GO:0003676
Cca10g01280 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 284 IPR000504 GO:0003723
Cca10g01280 296 CDD RRM1_CID8_like 109 188 IPR034823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01280 Cca-Chr10 17422802 17429194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01280 108 265 Eukaryotic Initiation Factors Gene Family AT1G34140 27.329 1.35e-12 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01280 10 17422802 17429194 Cca10g01280 10 17422802 17429194 ECH