Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01270 ATGGCTTCTAGAACCACCATCATCACACTCAAGCTCTCTTTCCTCTTGAGTTTCCTTCTCTTAGTTTCAGTGTTGAGTGTGAGAGTGAGAGGGTCAATTCCTCCAACATGCAAGCGCATAGAGTGTCCCACCCATGATGTCATTGAAGTTGGTCATGGCTATGAAATCCGCCACTATCATAATTCTACTCTCTGGATGTCAACTTCTCCCATTCAAAACATTTCTCTTGTTCAAGCCACGAGAACTGGCTTTAGGAGGCTATTTGATTACATTCAGGGCAAGAACAACTACAAGCAAAAAATTGAGATGACAGCACCTGTGATCACAGAAGTTTCACCTGGTGATGGACCCTTTTGTGAATCCTCCTTTGTTGTCAGTTTCTTTGTGCCAAAAGAGAACCAAGCAAACCCTCCTCCTGCAAAGGGTCTCCATGTCCAAAGATGGAACAGTGTGTATGTAGCAGCAAGACAATTTGGTGGATATGTAAATGATTCAAACGTTGGTGTGGAAGCTGCTGCATTGAGAGCTAGAATTGCAGGCACTAGTTGGTCTCGTGCCATTGACAAAAGCCACAAAGATGGTCGTGCTTCTGTTTACACTGTGGCACAATATAATGACCCTCTTGAATATGATCATAGGGTGAACGAGATATGGTTCTTGTTTGACATGGAAAGTGAGAGGCATGCAATGTGA 693 0.4358 MASRTTIITLKLSFLLSFLLLVSVLSVRVRGSIPPTCKRIECPTHDVIEVGHGYEIRHYHNSTLWMSTSPIQNISLVQATRTGFRRLFDYIQGKNNYKQKIEMTAPVITEVSPGDGPFCESSFVVSFFVPKENQANPPPAKGLHVQRWNSVYVAARQFGGYVNDSNVGVEAAALRARIAGTSWSRAIDKSHKDGRASVYTVAQYNDPLEYDHRVNEIWFLFDMESERHAM 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01270 230 Pfam SOUL heme-binding protein 40 219 IPR006917 -
Cca10g01270 230 SUPERFAMILY Probable bacterial effector-binding domain 33 221 IPR011256 -
Cca10g01270 230 Gene3D Regulatory factor, effector binding domain 39 230 IPR011256 -
Cca10g01270 230 PANTHER F3F9.4 8 230 - -
Cca10g01270 230 PANTHER HEME-BINDING PROTEIN-RELATED 8 230 IPR006917 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01270 Cca-Chr10 16974775 16976759 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01270 10 16974775 16976759 Cca10g01270 10 16974775 16976759 ECH