Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01269 ATGCTCGAACCGCGGGAATCTGATATACCTGTCCTGTTTCTGGTCCTGGTTGTGCTTCCCTTGGTGGCTTACATCTTACTTGGAAAATGGAGTGAAACTTCTAAGAAGAGAGATAGGATAAATTTGCTTGCCCATTTGGCTGCTGAAGAAGCTCTGAGAGCTGAAGAAATGGCTGTGGCCGAAGTAATTCCTCCAGTGTCTTCTTCAAAAAATGAACATCATGAGTGTGCTAGGTGCTCTGCTCCGGCCAAAACTCGCTGCTCCAGATGCAAATCTGTTAGATATTGCTCTGGAAATTGTCAAATAATCCATTGGAGGCTAATTCACAAGCAGGAATGCCAGCAACTGGAAACTCATAAATCAAGCTCATTTCCTCTGGCTGTTTCACTTGAGGAATTTAGTCATGGGAGTTGCTTTTATGAAAATTTGAACAACCAGTTCGCAGGTCCGACATTGAAGCAGACTTTAAGGGAGAGTGCACCTTTGGACAATTTGGTTCATCCCTTGTCAGGCACTGCGGTTCCTGCTACAGCTGATTTTTCCCCATTTAATAATTTTCAACCTTCTACTTTTGAAAGACCTTCCCATAAATACAACAGAGAAACACGGAGAAGAGATAATGGGTCTATATATGAATCTTCTATTGAATCTTCTGATTATAAAGCTACCTGTTCTCCCTCTTCAAGTGTTGTATCGAAGGAGGCATTTATGAGACAGAAGTCAAGAAATAACAATGATTCTGTGTTGGAGGAAGAAATTTCTAATGTGAATTCTGGTGGCTTTGGAGTTTATATTAACAAACATGATGCATCAAGAAATACAACCCTTGAGGATGACAACCATGAAAGTCAATATGGAAATGCATTTGTAACAAGAAACAAATATGGACGCCCAAGTGTGTCAAGTGCTGCAAACAATGATAACAGTGTAGATGAATTTGAAACAGACATAACCACTAAAAATGTAAATGTAATCAAAGGGGGAACTTATCATTCTGATGAAGCAGCGCAATACAAACGCTCTTCTGAAACAACAATCAAAGGAGGCATGAAAGCTAAAAAGATATTACATCCTCCCAAGACCAAATCTTCTAAATCACCAAAGTCAACATCAAAGACATCAGCAGACTTTTGTTGTTCAGAAATGGAGAAGAAAGGGAAAATTCCAGATGAACCAAAAGTTGCTGGAATCAGTGATACCATCCCTTTACATTGCAATGGTAGCAATGTGGCTGCAAGCACTGGATTTATGAAAATGATGGGATTGAGAAAATCAACAAAACTTGCTCCTCTAGCCTCTACAGAAGGCATTGATGTAAAGTACAAGAAGGTGAAGAAGATAAAGATGTTGTTTCCTTATGATGAATTTGTAAAGATTTTTCAGAGTGATGTCTTTGGCATATGCCCCAGGGGCCTTTTAAATTGTGGGAACAGTTGCTATGCCAATGCCGTCTTGCAGTGCTTAACTTCTACAAAGCCTCTAGTTGTCTATTTGCTTTATAGATCACACTCAAAAGCCTGTTGTGCTAAAGATTGGTGTCTCATGTGTGAGTTAGAGCAGCACATAATGATTTTAAGAGAAAATGGGGCTCCTCTATCTCCTAGTAGGATACTTTGGCATATGCGGAGCATTAACTGCCACATGGGTGAAGGAAGTCAGGAAGATGCCCATGAATTTTTAAGGCTTCTAATTGCATCAATGCAATCTATATGCTTGGAGGGACTTGGTGGTGAGAAAAAGGTTGATCCTAGACTACAAGAAACAACTTTCATACAACATACTTTTGGTGGTCGTCTGCAATCCAAGGTTAAGTGTTTGAATTGTAATCATGAGTCAGAAAGGTATGAGAACATTATGGACTTGACGTTGGAGATTTTGGGTTGGGTTGAGTCACTGGAAGATGCACTGACTCAGTTTACATCCCCTGAAGATTTGGATGGAGAAAATATGTACAGATGTGGAAGGTGCACAACATATGTTCGAGCTAGAAAGCAGCTAAGCATACATGAGGCTCCTAACATCTTGACTATAGTTTTGAAGAGATTTCAGGAAGGAAGATATGGGAAAATTAACAAGTGCATAACTTTTCCTGAAATGTTGGATATGATTCCTTTCATGACTGGGACGGGTGATATTCCACCACTTTACATGCTTTATGCTGTTGTTGTGCACCTGGACACACTAAATGCATCTTTCTCTGGACACTATGTTTCATACGTGAAAGATCTGCAAGGCAATTGGCACAGGATAGATGATACTGAGGTTCAGCCGGTGCTAATTAATCAGGTCATGTCAGAAGGCGCATATATCTTATTCTATATGAGATCTTGTCCCCGTCCTCCGGTAGAACATGCATTGAAAGCCATGCAGCAGTCAGTATATGATTCTTCAAAGCACAATCCAATGGAAATGCAGAAGCCTAATAAACCAGTACACAGCAGGCATGGCAATCAATTTTGTGTCCCAGAGGCACCACCCCATGCCAGGCCAGAAATCGCCACTCACATCATCGACACCACTAATGGCTTCCTCAAAAAAAGCACCAATAGGAATGCCCTACCAGTGACACAAACTTATGCCGAAAATGTCAGGAGCGAGTTTTCGGATGCCACATCAAGTGATTGGTCCCTCTTCACAAGCTCAGATGAGGCCTCTTTCACAACTGAGAGCACCAGGGACTCCTTCAGCACTGTAGACTATGGTGATTCATGCAACATGGATCCAATTTCATCTATCTTCAATTACACCCCAGAAAAGTCCTACTTGAAGTTTTCACATAGTAGGCCAGTTACCAGGGTGTTCCATGAAAAGGGTCATGTTGAACAAGTACAGAGAATTGATCACTCTAAAAGGGTCACAAATTCTTCAAATGAACATTCACCAAATGGGAATTGTGGCATGTATGTACAATATGGGAGTAATCCTGTGTGTGGTATTACCCGCACTTCTTTCTAG 2955 0.4095 MLEPRESDIPVLFLVLVVLPLVAYILLGKWSETSKKRDRINLLAHLAAEEALRAEEMAVAEVIPPVSSSKNEHHECARCSAPAKTRCSRCKSVRYCSGNCQIIHWRLIHKQECQQLETHKSSSFPLAVSLEEFSHGSCFYENLNNQFAGPTLKQTLRESAPLDNLVHPLSGTAVPATADFSPFNNFQPSTFERPSHKYNRETRRRDNGSIYESSIESSDYKATCSPSSSVVSKEAFMRQKSRNNNDSVLEEEISNVNSGGFGVYINKHDASRNTTLEDDNHESQYGNAFVTRNKYGRPSVSSAANNDNSVDEFETDITTKNVNVIKGGTYHSDEAAQYKRSSETTIKGGMKAKKILHPPKTKSSKSPKSTSKTSADFCCSEMEKKGKIPDEPKVAGISDTIPLHCNGSNVAASTGFMKMMGLRKSTKLAPLASTEGIDVKYKKVKKIKMLFPYDEFVKIFQSDVFGICPRGLLNCGNSCYANAVLQCLTSTKPLVVYLLYRSHSKACCAKDWCLMCELEQHIMILRENGAPLSPSRILWHMRSINCHMGEGSQEDAHEFLRLLIASMQSICLEGLGGEKKVDPRLQETTFIQHTFGGRLQSKVKCLNCNHESERYENIMDLTLEILGWVESLEDALTQFTSPEDLDGENMYRCGRCTTYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMIPFMTGTGDIPPLYMLYAVVVHLDTLNASFSGHYVSYVKDLQGNWHRIDDTEVQPVLINQVMSEGAYILFYMRSCPRPPVEHALKAMQQSVYDSSKHNPMEMQKPNKPVHSRHGNQFCVPEAPPHARPEIATHIIDTTNGFLKKSTNRNALPVTQTYAENVRSEFSDATSSDWSLFTSSDEASFTTESTRDSFSTVDYGDSCNMDPISSIFNYTPEKSYLKFSHSRPVTRVFHEKGHVEQVQRIDHSKRVTNSSNEHSPNGNCGMYVQYGSNPVCGITRTSF 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01269 984 SUPERFAMILY HIT/MYND zinc finger-like 72 117 - -
Cca10g01269 984 CDD Peptidase_C19E 469 774 - -
Cca10g01269 984 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Cca10g01269 984 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 20 934 - -
Cca10g01269 984 Gene3D - 65 119 - -
Cca10g01269 984 MobiDBLite consensus disorder prediction 355 374 - -
Cca10g01269 984 Pfam Ubiquitin carboxyl-terminal hydrolase 471 773 IPR001394 GO:0004843|GO:0016579
Cca10g01269 984 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 470 776 IPR028889 -
Cca10g01269 984 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 471 486 IPR018200 GO:0004843|GO:0006511
Cca10g01269 984 SUPERFAMILY Cysteine proteinases 467 776 IPR038765 -
Cca10g01269 984 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 934 - -
Cca10g01269 984 Pfam MYND finger 76 113 IPR002893 -
Cca10g01269 984 Gene3D Cysteine proteinases 467 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01269 Cca-Chr10 16964608 16973567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01269 444 787 Miscellaneous Gene Families AT4G31670 52.707 1.81e-125 393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01269 10 16964608 16973567 Cca10g01269 10 16964608 16973567 ECH