Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00920 ATGGGAATGAAGAGCACAGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTAGGTCCACAGGTAGAAAAGATAGGCATAGCAAAGTTTACACTGCAAAGGGTCCTCGTGATCGCAGGGTTAGGCTTTCAGCACACACAGCCATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGACAGACCAAGCAAGGCTGTGGACTGGCTCATCAAGAAGGCCAAGAATGCCATTGACAAGCTCGCTGAGCTTCCTCCATGGCAACCTACTCCCAACACTGCAGATGCTGAGAACAACAATGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGCTACAATTTTCAGCTGCAAAGGCAACTAGGTGAGGACCATGATAATAACCACCACCACTCACCTTTCATTCCTTCTCCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCCACCTCCTCCATCAACTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTCTCCCTTCACTCCTTCCAAGACCCTGGCTTGATTCATGGCCAGCCCCAAGCAGGTGCAAACCAAACACCTTCCAATGACCAAAACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAGGCCAATTACCCCAGGATTGTGGCTTGGAACAATGATGCAAGTACTGCAGATATGAACAGAACCGGCTTCATGGTCAATTCACAAGCACTTCTAAGCCAAGGTGGTTCTAATGCATATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCCATGGCTTCCTCAGAACATCATCACAAGTCACAACCAATTCAACAGGCTTCCATCTTTGGCAGCAGGTTCCTCTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATTCAAGGTGAGGATGGAGTTGCTGGGGACAAGCCTTCCTCTTCGTCTCCTAATTCTCATCACTGA 1026 0.4854 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWQPTPNTADAENNNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNNHHHSPFIPSPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHGQPQAGANQTPSNDQNQTLFSGSTQVGFEANYPRIVAWNNDASTADMNRTGFMVNSQALLSQGGSNAYSQRGTLQSSFSPSLRPWSDIPMASSEHHHKSQPIQQASIFGSRFLSDALPGFCIPARIQGEDGVAGDKPSSSSPNSHH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00920 341 MobiDBLite consensus disorder prediction 192 215 - -
Cca10g00920 341 PANTHER TRANSCRIPTION FACTOR TCP4 2 341 - -
Cca10g00920 341 MobiDBLite consensus disorder prediction 322 341 - -
Cca10g00920 341 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Cca10g00920 341 MobiDBLite consensus disorder prediction 258 297 - -
Cca10g00920 341 MobiDBLite consensus disorder prediction 258 278 - -
Cca10g00920 341 Pfam TCP family transcription factor 23 126 IPR017887 -
Cca10g00920 341 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 341 IPR005333 GO:0003700
Cca10g00920 341 MobiDBLite consensus disorder prediction 198 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00920 Cca-Chr10 10637161 10640613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00920 8 341 TCP Transcription Factor Family AT3G15030 42.260 1.76e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca10g00920 TCP 5.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00920 - - gmx:100814907 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00920 10 10637161 10640613 Cca10g01152 10 14763459 14765382 ECH
Cca10g00920 10 10637161 10640613 Cca04g01482 04 20711667 20714666 ECH
Cca10g00920 10 10637161 10640613 Cca10g00920 10 10637161 10640613 ECH