Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00487 ATGGATCCTTCTAGTGCACTACCCGAGCAAATGTCTAGCGAGTCATCAATGGAGAACATGTTAGGCTGTTCAAAAGCTCAGCAAGAGAAGAAGCCAAGGCCTAATCCAGAAGAAGCTTTGAAATGTCCAAGATGCGACTCCACCAGCACCAAATTTTGCTACTATAACAACTACAGTCTTTCTCAGCCAAGATATTTCTGCAAATCTTGCAGAAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCAGGAAGAACAGAAGGTCATCATCATCATCAAAGAGGGCTCAGGATCAGAACTTCACACCCAATCCTAACCCACTCCCTCATTTGTCTTATGATTCCAATGACTTCACTCTAGCATTAGCCAAGTTTCAAAAACAATCAAGTGGCCAATTAGGTTACAATAGTGACCATGATCTTTCAATTTTGGGGAACCCCACAGGGTCCTTTTGTGATATTCTAGGCAATTCAAACATGAATCATCAACCCTCCTCAGCAAATCCGTCATTTTTTGATGCAATTAGAACTGGGTTCCTTGAAACACAAAATCATCTTCAGAATCTGTATTGTGTGTATGGAAGTGGGGACATGGGGGAGGTGGATAATGGAAATTCTGGTGGAGACATAATGATGCCTTATGATCATGTAATGAGCAATGCAGCATCTCAGTCAGTGAGTGTAACTAGCATGAAGCAAGAACTGTGTACTGGTAGAGATCAAAGTGAAAGGAGGGTGTTTGGGAGTTTCAATGGAGACACAAATTACATGGGTGAACTTGATTCAGGAAGAGCAATGAGTTGGAACAATTTCACTTCATCTTGGCATGGGATTCTCCGAAGTCCCCTAATGTAG 873 0.425 MDPSSALPEQMSSESSMENMLGCSKAQQEKKPRPNPEEALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRRSSSSSKRAQDQNFTPNPNPLPHLSYDSNDFTLALAKFQKQSSGQLGYNSDHDLSILGNPTGSFCDILGNSNMNHQPSSANPSFFDAIRTGFLETQNHLQNLYCVYGSGDMGEVDNGNSGGDIMMPYDHVMSNAASQSVSVTSMKQELCTGRDQSERRVFGSFNGDTNYMGELDSGRAMSWNNFTSSWHGILRSPLM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00487 290 MobiDBLite consensus disorder prediction 84 116 - -
Cca10g00487 290 MobiDBLite consensus disorder prediction 1 41 - -
Cca10g00487 290 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Cca10g00487 290 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Cca10g00487 290 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 10 289 - -
Cca10g00487 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 289 IPR045174 GO:0003700|GO:0006355
Cca10g00487 290 MobiDBLite consensus disorder prediction 99 116 - -
Cca10g00487 290 MobiDBLite consensus disorder prediction 1 23 - -
Cca10g00487 290 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00487 Cca-Chr10 5071983 5073870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00487 24 144 C2C2-Dof Transcription Factor Family AT5G60200 56.934 1.09e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca10g00487 zf-Dof 5.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00487 - - gmx:100795408 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00487 10 5071983 5073870 Cca10g00487 10 5071983 5073870 ECH
Cca10g00487 10 5071983 5073870 Cca04g00735 04 7327650 7330013 PCT