Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00346 ATGGGGGAAATCGAAGAAATTGGAGCTGATGTCTGTTCGGATATAGAAGTTGATGATATTAGATGCCCCAATATAGCAGAGAAAGATGTCAGTGATGAAGAGATTGAAGCAGAAGAATTGGAGCGGCGGATGTGGAAGGATCGAATTAAACTCAAAAGGCTGAAGGAAAAACAGAAGCTTGCAGCGCAGCAAGCTGCAGAAAAGCAAAAGCCAAGGCAGTCCAGCGATCAAGCTCGTAGGAAGAAAATGTCCAGAGCACAAGATGGGATTCTTAAGTATATGCTGAAGCTTATGGAAGTCTGCAAAGCTCGTGGGTTTGTGTATGGTATCATTCCTGAGAAGGGAAAGCCAGTCAGTGGTTCCTCTGATAACATTAGAGCTTGGTGGAAGGAGAAGGTAAAGTTTGATAAGAATGGCCCTGCAGCCATAACCAAGTATGAAGCAGAGTGTCTTGCTATGAGTGAGGCTGACAATAGTCGGAATGGTCATTCTCAGAGTATTCTCCAAGACTTGCAAGACGCAACGCTTggatcactcttatcatctttgatgcagcattgtgatcctcctcagaggaagtatccattggaaaagggtatacccccaccttggtggccaactgggaatgaagattggtggacacagttgaatttacctcctggtcagagtcctccttataagaagcctcatgatttgaagaagatgtggaaagtgggagtccttactgctgttataaagcacatgtcaccaaatattgcaaagattaggaggcatgttcgccagtcaaaatgcttgcaggacaagatgacagcaaaggaaagtgcaatttggTTGGGGGTATTGAGTCGAGAAGAGGCTCTCATTAGGCAGCCTAGTAGTGATAATGGTACATCTGGAATAACTGGAATGCCACCTGGCGTTCCTGCTAGGAATAAGCAAGGTGCTACTAGTAGTGATAGCAACTATGATGTGGATGGTACTGACGATGGCATTGGTTCTGTTTCTTCTAAAGAAGATAGGAGAAGTCAGTTTATGGATACCGAGCCATCAGATAACTCGCGTAGGGGTAGGAATTCTGTCCAAGATAAGAGGAAACCTACTCCAAAAAAACCCCGTTTGGAGTCGCAGGATGTTGACAAACCACCAGCACAATCTGACAATGAAATTTTACAAGTTGAGCCAAGAAGCAACAAGTTCAATATGAACCAGACGGAAGCACAGGTTGTTGGTGTTCAGATTCATGGAAATGAACAGTCCAATGAGACAAATTCTGCTGCAAGACCACTGGAAAAGGAACTTGAGGTGACCACTGCAAGACCACTGCACCTACTGGCACCTGACTTTGATGACTACTCTTATTTACATACAAACAACTTAATTCCCTCAGAAAGTGTGTATATGAGTGGAAGGTCAATGCACTATCCGGAGTTGCAAAACTCTGACATGCATCATGAAACCACTTATCTTTATAATCCCGCAGCAGGATATCAACCTGGTCAGGATGGGCAGCAGCTACAGTCCGGGAACAATGAACAAGTTAGGCCAGAGAATGATGCAGTTTCTATGCAGGCAGTGCATATGAAAGGGGATGAAATTAATGGAGGAGACTTGCCATTTTTTGGTAAAGATGCATTTCAAAATGATCTTGATAGACCTACTATGGATCACTCTTTCTTTGGATCACCACTTAGTGGCATGTCATTAGATTTTGGAGGACTTAGCAGTCCATTCCATTTAGATGATTTCTTGGGTGATGATGAAATGATACAGTACTTTGGGGCATAA 1785 0.3602 MGEIEEIGADVCSDIEVDDIRCPNIAEKDVSDEEIEAEELERRMWKDRIKLKRLKEKQKLAAQQAAEKQKPRQSSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDKNGPAAITKYEAECLAMSEADNSRNGHSQSILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGIPPPWWPTGNEDWWTQLNLPPGQSPPYKKPHDLKKMWKVGVLTAVIKHMSPNIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREEALIRQPSSDNGTSGITGMPPGVPARNKQGATSSDSNYDVDGTDDGIGSVSSKEDRRSQFMDTEPSDNSRRGRNSVQDKRKPTPKKPRLESQDVDKPPAQSDNEILQVEPRSNKFNMNQTEAQVVGVQIHGNEQSNETNSAARPLEKELEVTTARPLHLLAPDFDDYSYLHTNNLIPSESVYMSGRSMHYPELQNSDMHHETTYLYNPAAGYQPGQDGQQLQSGNNEQVRPENDAVSMQAVHMKGDEINGGDLPFFGKDAFQNDLDRPTMDHSFFGSPLSGMSLDFGGLSSPFHLDDFLGDDEMIQYFGA 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00346 594 Coils Coil 37 57 - -
Cca10g00346 594 Pfam Ethylene insensitive 3 38 285 IPR006957 GO:0005634
Cca10g00346 594 Gene3D - 72 148 IPR023278 GO:0003700|GO:0005634
Cca10g00346 594 Gene3D - 157 296 IPR023278 GO:0003700|GO:0005634
Cca10g00346 594 MobiDBLite consensus disorder prediction 332 381 - -
Cca10g00346 594 MobiDBLite consensus disorder prediction 60 83 - -
Cca10g00346 594 MobiDBLite consensus disorder prediction 492 512 - -
Cca10g00346 594 MobiDBLite consensus disorder prediction 288 394 - -
Cca10g00346 594 MobiDBLite consensus disorder prediction 497 512 - -
Cca10g00346 594 SUPERFAMILY DNA-binding domain of EIN3-like 166 289 IPR023278 GO:0003700|GO:0005634
Cca10g00346 594 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 11 592 IPR006957 GO:0005634
Cca10g00346 594 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 11 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00346 Cca-Chr10 3682281 3685601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00346 16 577 EIL Transcription Factor Family AT1G73730 52.496 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Cca10g00346 EIN3 2.8e-126 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00346 10 3682281 3685601 Cca10g00346 10 3682281 3685601 ECH