Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02833 ATGGAAGATTTACTCGGCCTTTTAAGGATTCACATCAAGCGCGGGGTCAACCTCGCCGTTCGTGATGTCAGCACTAGCGATCCATACGTGGTCGTTAAGATGGGCAAGCAGAAGCTCAAGACTCGTGTGATTAAAAAGGATGTTAATCCTGAGTGGAATGAAGAGCTCACACTCTCTGTTACAGATCCCATTCGTTCATTTATACTGACTGTGTATGACCATGACACATTCAGCAAGGATGACAAAATGGGGGATGCAGAATTTGACATCTCACCGTATATAGAGGCCATAAAGATGAACCTAGAAGACCTCCCGAGTGGAACTATAATCACAAGAATAAAACCATGCAGGACAAACTGCCTGGCAGAGGAAAGTTGCATCACTTATGAAAATGACAAAGTTGTCCAAGATGTTGTCCTCAGATTGCGAAATGTGGAATGCGGTGAAGTGGAGATCCAATTGCAGTGGATTAAACTTCCTGGCTCCAAGGGTGTATCATGA 501 0.4431 MEDLLGLLRIHIKRGVNLAVRDVSTSDPYVVVKMGKQKLKTRVIKKDVNPEWNEELTLSVTDPIRSFILTVYDHDTFSKDDKMGDAEFDISPYIEAIKMNLEDLPSGTIITRIKPCRTNCLAEESCITYENDKVVQDVVLRLRNVECGEVEIQLQWIKLPGSKGVS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02833 166 CDD C2_ArfGAP 5 148 - -
Cca09g02833 166 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Cca09g02833 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 1 164 - -
Cca09g02833 166 Pfam C2 domain 6 92 IPR000008 -
Cca09g02833 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 164 IPR044562 -
Cca09g02833 166 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Cca09g02833 166 SMART C2_3c 7 102 IPR000008 -
Cca09g02833 166 Gene3D C2 domain 3 164 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02833 Cca-Chr9 53894147 53895229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02833 38 166 C2H2 Transcription Factor Family AT1G70790 59.701 6.35e-51 158
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02833 09 53894147 53895229 Cca08g00302 08 4408832 4411368 PCT