Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02800 ATGGATAGAGAAGATCAGAAGGCGTCTCTACTGTCTCCATTGGTACATATCACAGTGGAAGATAGACTCAAAGTTGATAATAATATAGAGCGAAACAAGGATAAGGCAATAGAGAGAGCTGAAGTGTATGAAGAAGTGAGGAAGCAGTTATGGCTAGCAGGGCCTTTAATATCTGTTTCTATATTAAATTATTCCCTACAAATTATATCTGTGATGTTTGTGGGGCATCTCGGCGAATTGCCCCTCTCTGGTGCTTCAATGGCTACTTCTTTTGCTTCTGTCACTGGTTTTAGCTTATTGgtgggaatggctagtgctttggataccttgtgtggacaatcatatggagcaaagcagcaccatatgttaggcatacacatgcagagggccatgcttgttcttatgattgttagcatacaccttgcatttatatgggcaaacacaagatccattctaattgccctcggcctagatcctgaaatatctgaagcagctggacaatatgctcagctaatgattccaagtctttttgcctatggaattcttcagtgcctcaacagatttttgcaaacccaaaatattgtatttccaatggtgttcagctctggagtcactactttactgcatattcttatatgttggactatggtattcaaatctggacttgggaacagaggagctgccattgcaaatgctatatcttactggataaatgtcttgatcctaacactctatgtcaagttttctccctcatgttcaaaaacttggactggattttcaaaagaggctttgcatggcatcccttcttttcttagaattgcaattccttctgctgttatggtttgcttggaaatgtggtcatttgaaatgatggttctcctctctggccgtcttccaaatccaaaattggaaacatcagttctttctatctgtctgaatacttcaacaactgtttggatgatcccctttggactcagtggagctgtaagcactcgtgtatcaaatgaactaggagctggtcatccacaagctgcacgtttagctgtgtattttgtctttataatggccattattgagggaacttttattggagcagtgataatactagtacgcaatatttggggctatgcatatagtaatgaagtagaagttgtccactatgtagctatcatgttgccaattcttgcgaCATCCATTTTCCTGGATGGACTCCAGTGTGTTCTTTCAGgcacagctagaggatgtggttggcaaaaaataggtgctttcattaatctaggatcatactatttagttgggattccatcagctatcttatttgcttttgtcatgcaccttggtgggaagGGGCTTTGGCTAGGGATCATATGTGCACTAGTTGTTCAAGTGTCATGTCTTCTAATCATTACTATACGTACTGATTGGGAACAAGAGGCAAAGAAGGCTAAAGAAAGGGTGTATCATTCAATGAGAGCTGAGATCATAGTCTCATAA 1494 0.1319 MDREDQKASLLSPLVHITVEDRLKVDNNIERNKDKAIERAEVYEEVRKQLWLAGPLISVSILNYSLQIISVMFVGHLGELPLSGASMATSFASVTGFSLLVGMASALDTLCGQSYGAKQHHMLGIHMQRAMLVLMIVSIHLAFIWANTRSILIALGLDPEISEAAGQYAQLMIPSLFAYGILQCLNRFLQTQNIVFPMVFSSGVTTLLHILICWTMVFKSGLGNRGAAIANAISYWINVLILTLYVKFSPSCSKTWTGFSKEALHGIPSFLRIAIPSAVMVCLEMWSFEMMVLLSGRLPNPKLETSVLSICLNTSTTVWMIPFGLSGAVSTRVSNELGAGHPQAARLAVYFVFIMAIIEGTFIGAVIILVRNIWGYAYSNEVEVVHYVAIMLPILATSIFLDGLQCVLSGTARGCGWQKIGAFINLGSYYLVGIPSAILFAFVMHLGGKGLWLGIICALVVQVSCLLIITIRTDWEQEAKKAKERVYHSMRAEIIVS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02800 497 Pfam MatE 55 215 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca09g02800 497 Pfam MatE 276 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca09g02800 497 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 485 - -
Cca09g02800 497 TIGRFAM matE: MATE efflux family protein 55 452 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca09g02800 497 PANTHER PROTEIN DETOXIFICATION 26 485 - -
Cca09g02800 497 CDD MATE_eukaryotic 45 481 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02800 Cca-Chr9 53610664 53614119 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00283 08 4071301 4076285 Cca09g02800 09 53610664 53614119 ECH
Cca07g02475 07 53524002 53527950 Cca09g02800 09 53610664 53614119 ECH
Cca09g00497 09 12422446 12435332 Cca09g02800 09 53610664 53614119 ECH
Cca02g02592 02 47038579 47041997 Cca09g02800 09 53610664 53614119 ECH
Cca09g02800 09 53610664 53614119 Cca09g02800 09 53610664 53614119 ECH