Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02797 ATGGACGGAGACGGTCGAAATGCATCTCTACGATCTCCCTTGATTCAAATCTCGGAGCAAGATGGAACCATAGTTGATAATAATGAAACACAGCAAAACAAGAGAAGGGTAAGAGAAAAAAGAGAAATTTTTGAAGAAGTCAAGAAGCAGTTATGTCTTGCAGGGCCCTTGGTATTTGTGGGTCTGCTAAACTTTTGCATTCAGATTATATCTATAATGTTTGTGGGCCACCTCGGTGAGTTGCCTCTCTCTGGTGCTTCAATGGCTACTTCATTTGCTTCTGTCACTGGTATTTGCTTATTGctgggaatggcatgtgccttggacaccttgtgtggccagtcatatggagcaaaacagtaccgcatgttaggcatacacacgcagagggccatgctcgttctaatgattgtcagcatacccctagcagtcatttgggcaaatacaagatccattctaattttccttggccaagatcctgaaatctctgcagaagctggaaaatatgctcagttattgattccaagcctttttgcctatggtcttattcagtgcctaaacagattcttacaaacccaaaatattgtatttccaatggtattctgctctggagctactacattactccatctttttgtttgttggattatggtattcaaatttggactaggaagtagaggagctgctatagcaaactctatatcttattgtgtgaatgctttgatgctggcactctatgtcaacttttctcctgagtgtgcaaaatcttggacaggcttttcaaaagaggcactgcataacattccctcttttctaaggcttgccattccttcggctgttatggtttgcttggaaatgtggtcatttgaaatgatggttctcctatccggtcttctaccaaatccgaagttggaaacatcagtgctttctatctgCTTGAATACAGCTTCAACTGTTTGGATGATCCCTTCTGGTTTCAGTGAAGCTGTAAGCATTCGTGTGTCAAATGAACTCGGAGCTGGTCATCCTTGGGTTGCACGTTTAGCTGTTTACGTTGTCTTGGCAATGGCCCTTGTTGAGGGAACCTTAGTTGGAGCAGTAATGATGCTAATGCGCAATGTTTGGGGTTATGCATATAGTAAGGAAGTAGAAGTTGTAGAATATGTAGCAATAATGTTGCCATTGCTTGCTGCATCCAACTTCCTGGATGGAATCCAGTGTGTGCTTTCAGgcacagctagaggatgtggctggcagaaaatttgtgcctttatcaatctaggttctttttatctagttgggattccATCAGCCATCGTTTTTTCTTTTGTATTGCATATTGGAGGGAAGgggctgtggctggggatcatatttgaacttcttgttcaagtattgtctctgttaatcatcaccttacgtactgattgggaggaagaggcaaagaaggctacagatagagtctatgagtcaatgACACCAGAGAACATAGTCTATTAA 1497 0.1864 MDGDGRNASLRSPLIQISEQDGTIVDNNETQQNKRRVREKREIFEEVKKQLCLAGPLVFVGLLNFCIQIISIMFVGHLGELPLSGASMATSFASVTGICLLLGMACALDTLCGQSYGAKQYRMLGIHTQRAMLVLMIVSIPLAVIWANTRSILIFLGQDPEISAEAGKYAQLLIPSLFAYGLIQCLNRFLQTQNIVFPMVFCSGATTLLHLFVCWIMVFKFGLGSRGAAIANSISYCVNALMLALYVNFSPECAKSWTGFSKEALHNIPSFLRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPKLETSVLSICLNTASTVWMIPSGFSEAVSIRVSNELGAGHPWVARLAVYVVLAMALVEGTLVGAVMMLMRNVWGYAYSKEVEVVEYVAIMLPLLAASNFLDGIQCVLSGTARGCGWQKICAFINLGSFYLVGIPSAIVFSFVLHIGGKGLWLGIIFELLVQVLSLLIITLRTDWEEEAKKATDRVYESMTPENIVY 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02797 498 Pfam MatE 277 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca09g02797 498 Pfam MatE 56 216 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca09g02797 498 TIGRFAM matE: MATE efflux family protein 56 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca09g02797 498 Coils Coil 27 47 - -
Cca09g02797 498 CDD MATE_eukaryotic 46 482 IPR045069 GO:0042910|GO:1990961
Cca09g02797 498 PANTHER PROTEIN DETOXIFICATION 26 486 - -
Cca09g02797 498 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02797 Cca-Chr9 53595330 53598511 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00282 08 4059966 4065181 Cca09g02797 09 53595330 53598511 ECH
Cca02g02593 02 47046600 47051072 Cca09g02797 09 53595330 53598511 ECH
Cca09g02797 09 53595330 53598511 Cca09g02797 09 53595330 53598511 ECH