Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02718 ATGGACAAGCTCTTTTTGAACTGTTTCATTGGATACTGCCTTCTTTATTCTCTCTTGGCTGTGCATGGCAAAGAATTGTCATGCAATGAAACCCCCTACCCCCTTGTGTGCAAGCATTACATTGGCACCACCACCAACACATTATCAGCCCTAGATGCTTCATCTTCTTCCTTCCATGATGTGGCCCTTAAGGTCACCATGGAGCAAGCCATTGAGGCTCATAAACTTGTCTCTAAAATGGACTTGGATAATTTCAAGGACAAGAGAGCCAAGTCGGCATGGGAAGATTGTTTGGAGCTCTATGAGGACACACTTTATCAACTCAAACGCTCAATGAACTCAAACAACCTAAATGACAGATTGACCTGGCAAAGTGCATCCATTGCCAACCATCAAACATGCCAAAATGGTTTCACTGAATTCAACCTTCCCTCTCACCTAAACTACTTCCCTTCCATGCTAAGCAACTTCTCCAAATTGCTTAGCAATTCCTTGTCCATTAGCCAGGCTATGACTTTGACGACATCATCAACCTCAGCATCGACCAAACAAAGTGGTGGGCGAAGGTTGCTTTCAGATGGCTTCCCCTATTGGATGTCACATTCAGATAGGAGGCTTCTTCAGGAATCAGCACCAAAAGCTGATGTTGTGGTGGCACAAGATGGGAGTGGGAACTATAAGACCATCTCAGAAGGTGTGGCTGCAGCTGCTAAACTCAGTGGGAAAGGACGTGTTGTTGTGCACGTCAAAGCTGGTGTTTACAAAGAGAGTGTTGATATCAAGAGGACAATGAAGAACATACTGATGATTGGAGATGGAATGGGTGCTACCGTTGTTACTGGTAATGATAACGCACAAGATGGCTCCACTACTTTTCGTTCTGCCACTTTTGCGGTTTCCGGTGACGGGTTCATCGCTCGGGACATGACGTTCGAGAACACAGCGGGGCCGCAAAAGCACCAGGCGGTGGCGCTCCGGTCCGGCGCCGACCACTCGGTGTTCTACCGGTGCAGCTTCAAGGGGTACCAAGACACGTTGTACGTGTACGCGAACCGTCAGTTCTACCGTGATTGCGACATATACGGAACCATAGACTTCATATTCGGGGACGCCGTGACGGTGCTTCAGAACTGCAACATCTACGTGAGGAGACCGATGAGCAACCAGCAGAACACGGTGACGGCGCAGGCGAGAACAGACCCTAATGAGAACACAGGCATCATCATTCATAACTGTCGCATCACTGCAGCTGGAGACTTGAAGGCCGTGCAGGGCTCTTTCAGAACCTATCTAGGTCGGCCATGGCAGAAGTACTCCAGAACCGTCGTCATGAAGAGTTCCCTTGATAGCTTGATTAACCCTGCAGGTTGGTCTCCGTGGAGTGGAGACTTTGCTCTGAGCACTCTCTACTACGGTGAATATGCAAATACAGGAGCAGGTAGTGACACAGGAGGGAGGGTGAAATGGGCAGGGTTTCGTGTGATAAGCAGCTCTGAGGCTGTGAAATTCACTGTTGGAGATTTCCTCGCTGGGGACTCGTGGATTCCTGGGAGTGGCGTGCCGTTTGACGCAGGTTTATGA 1581 0.4915 MDKLFLNCFIGYCLLYSLLAVHGKELSCNETPYPLVCKHYIGTTTNTLSALDASSSSFHDVALKVTMEQAIEAHKLVSKMDLDNFKDKRAKSAWEDCLELYEDTLYQLKRSMNSNNLNDRLTWQSASIANHQTCQNGFTEFNLPSHLNYFPSMLSNFSKLLSNSLSISQAMTLTTSSTSASTKQSGGRRLLSDGFPYWMSHSDRRLLQESAPKADVVVAQDGSGNYKTISEGVAAAAKLSGKGRVVVHVKAGVYKESVDIKRTMKNILMIGDGMGATVVTGNDNAQDGSTTFRSATFAVSGDGFIARDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTIDFIFGDAVTVLQNCNIYVRRPMSNQQNTVTAQARTDPNENTGIIIHNCRITAAGDLKAVQGSFRTYLGRPWQKYSRTVVMKSSLDSLINPAGWSPWSGDFALSTLYYGEYANTGAGSDTGGRVKWAGFRVISSSEAVKFTVGDFLAGDSWIPGSGVPFDAGL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02718 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 172 IPR035513 -
Cca09g02718 526 SUPERFAMILY Pectin lyase-like 210 525 IPR011050 -
Cca09g02718 526 Gene3D - 209 526 IPR012334 -
Cca09g02718 526 ProSitePatterns Pectinesterase signature 1. 241 260 IPR018040 -
Cca09g02718 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 171 IPR035513 -
Cca09g02718 526 CDD PMEI-like_3 26 171 - -
Cca09g02718 526 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 20 525 - -
Cca09g02718 526 SMART PMEI_2 16 167 IPR006501 GO:0004857
Cca09g02718 526 Pfam Plant invertase/pectin methylesterase inhibitor 27 167 IPR006501 GO:0004857
Cca09g02718 526 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Cca09g02718 526 Pfam Pectinesterase 215 512 IPR000070 GO:0030599|GO:0042545
Cca09g02718 526 PANTHER PECTINESTERASE 20 525 - -
Cca09g02718 526 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02718 Cca-Chr9 52885623 52889572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02718 4 526 Carbohydrate Esterase AT1G23200 51.718 0.0 540
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02718 09 52885623 52889572 Cca09g02718 09 52885623 52889572 ECH