Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02717 ATGGTGCTCTTCAATGTCTCACGCCTACAGACCACTCCCTTTGATGGCCAGAAGCCCGGAACCTCTGGTCTCCGCAAGAAGGTGAAAGTATTCGTGCAACCTCATTACCTTCATAACTTTGTTCAGGCAACATTCAATGCGTTAACTGAGGAGAAAGTTAGAGGTGCAACGCTAGTTGTATCCGGTGATGGTCGTTATTTTTCAAAGGAAGCTATTCAGATTATAACTAAAATGTCAGCAGCAAATGGAGTAAGACGTGTTTGGATTGGTCAAAATGGATTGCTGTCAACTCCTGCAGTATCTGCTGTTATACGTGAAAGAGTTGGAGCTGACGGAGCCAAGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCTGGTGGCCCTAATGAGGATTTTGGGATTAAATATAACATGGAAAATGGTGGACCTGCACCAGAGGGAATTACTAACAAGATATATGAATTCACAACAACAATTAAGGAGTACTTGATTGCTGAAGATCTGCCAGATgtggatatcaccacagctggtgttacaaactttacaggccctgaaggaccatttgatgTTGAGGTGTTTGACTCAGCAAGTGACTATATAAAATTGATGAAGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGTTATGATGCACTACATGGGGTTGCTGGAGCTTATGCCAAGCGTATTTTTGTGGATGAACTTGGGGCACAAGAAAGCTCTTTACTGAACTGTACACCAAAGGAAGACTTTGGAGGAGGGCACCCAGACCCCAATTTGACATATGCAAAAGAGTTGGTTGCTCGGTTGGGATTGGGCAAAACAGAACCACAAGAAGAGCCCCCAGAGTTTGGTGCGGCTGCTGATGGTGATGCAGATCGCAACATGATACTTGGTAAAAGGTTTTTTGTCACTCCTTCAGATTCCGTGGCCATTATTGCTGCAAATGCTGTTGAATCTATACCATACTTCTCTGCTGGTTTAAAGGGTGTTGCCAGGAGCATGCCAACCTCGGCTGCCCTGGATGTTGTGGCCAAACATCTGAATTTGAAGTTTTTTGAGGTCCCCACCGGTTGGAAGTTCTTTGGTAATTTAATGGATGCTGGATTGTGTTCAGTCTGTGGTGAAGAAAGTTTCGGGACTGGTTCTGACCATATCCGTGAAAAAGATGGAATCTGGGCAGTTTTGGCCTGGCTGTCTATACTTGCGTATAAAAATAAAGATACACTTGAAGACAAGCTTGTTACCGTTGAAGATATTGTTCGCCAGCATTGGGCTACTTATGGGCGCCACTATTATACACGATATGACTACGAGaatgtggatgcaggtgcagcaaaggaatTGATGGGATATCTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATGAGATTGTGAAGGGGGTAAGGTCAGATGTTTCTAATGTTGTAAACGCTGATGAATTTGAATACAAAGATCCCGTCGATGGTTCCGTTTCATCACACCAGGGAATCCGATATTTGTTTGAGGACGGATCACGATTGATTTTCCGCCTCTCTGGAACTGGATCAGAAGGTGCAACTATTAGACTGTACATTGAGCAATATGAGAAAGATCCATCAAAGATTGGGAGACTTTCAAATGAAGCACTTGCTCCTCTTGTGGAAGTTGCATTGAAACTTTCAAAGATGGAGGAATTCACTGGTCGATCCGCTCCAACAGTCATTACATGA 1749 0.4117 MVLFNVSRLQTTPFDGQKPGTSGLRKKVKVFVQPHYLHNFVQATFNALTEEKVRGATLVVSGDGRYFSKEAIQIITKMSAANGVRRVWIGQNGLLSTPAVSAVIRERVGADGAKATGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITNKIYEFTTTIKEYLIAEDLPDVDITTAGVTNFTGPEGPFDVEVFDSASDYIKLMKSIFDFESIRKLLSSPKFTFCYDALHGVAGAYAKRIFVDELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARLGLGKTEPQEEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKDTLEDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMGYLVKLQSSLSEVNEIVKGVRSDVSNVVNADEFEYKDPVDGSVSSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSNEALAPLVEVALKLSKMEEFTGRSAPTVIT 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02717 582 Gene3D - 421 582 - -
Cca09g02717 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 117 131 IPR005841 GO:0005975|GO:0016868
Cca09g02717 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 222 241 IPR005841 GO:0005975|GO:0016868
Cca09g02717 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 258 271 IPR005841 GO:0005975|GO:0016868
Cca09g02717 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 293 308 IPR005841 GO:0005975|GO:0016868
Cca09g02717 582 CDD PGM1 10 582 - -
Cca09g02717 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 200 309 IPR005845 GO:0005975
Cca09g02717 582 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 3 114 IPR045244 GO:0004614|GO:0005975
Cca09g02717 582 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 114 582 IPR045244 GO:0004614|GO:0005975
Cca09g02717 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 199 314 IPR016055 GO:0005975|GO:0016868
Cca09g02717 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 317 439 IPR005846 GO:0005975|GO:0016868
Cca09g02717 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 301 446 IPR016055 GO:0005975|GO:0016868
Cca09g02717 582 Gene3D - 314 412 - -
Cca09g02717 582 PANTHER BNAA09G30060D PROTEIN 3 114 - -
Cca09g02717 582 PANTHER BNAA09G30060D PROTEIN 114 582 - -
Cca09g02717 582 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 499 543 IPR005843 GO:0016868|GO:0071704
Cca09g02717 582 Gene3D - 5 204 - -
Cca09g02717 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 17 164 IPR005844 GO:0005975|GO:0016868
Cca09g02717 582 Gene3D - 205 313 - -
Cca09g02717 582 SUPERFAMILY Phosphoglucomutase, C-terminal domain 441 582 IPR036900 GO:0016868|GO:0071704
Cca09g02717 582 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 118 127 IPR016066 GO:0000287
Cca09g02717 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 3 229 IPR016055 GO:0005975|GO:0016868
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02717 Cca-Chr9 52864973 52871991 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02717 09 52864973 52871991 Cca09g02717 09 52864973 52871991 ECH