Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02708 ATGGCTGAATTCAATGCAGATTTCCAAAGCTTTAGAACCTCGTTTCCTTTCTTAGATGTTGATAACATGGAAATGCACAACTTGATGCCATTTGACAGCTTCTTGGGCTCCCCAGAACCTGAATTTCCAGGAAACTTGCATGACAATTTTCCAGGTCTTGTGCAATGTGCCAACAATCACAATGCAGTTCCAGTTTTAGTTCCTATTAGTTCAATTAAAAATGAAATACATCAAGGTAGAAAGAGGAAAGGAACTGATATGTGTGAACCAAGTTCTGCAAATTCAACTTCTGTTGTTACTGAGAGTGGAAGCAAGACAAGAAATGGTTCTAGAAGAGGCAAGAGAGTTAAAAGGAATGCAATAGAAGACAAGAAACCAAATGAAGTAGTTCATGTTAGAGCCAAACGAGGTCAAGCCACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACCATGGGTATGGCAATAATGTTGGACGAGATAATAAACTATGTCCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCTATGAAGCTTACTACAGCAAGTACCTATTATGACTTCAATTCAGAATCAGATGCTTTAGAAACAATGCAGAGAGCAAGGGCATCCGAGGCGAAGTGTTTTAACGAGAATGCGTTGCAACAACCGTGGCCCCTGTGA 723 0.4039 MAEFNADFQSFRTSFPFLDVDNMEMHNLMPFDSFLGSPEPEFPGNLHDNFPGLVQCANNHNAVPVLVPISSIKNEIHQGRKRKGTDMCEPSSANSTSVVTESGSKTRNGSRRGKRVKRNAIEDKKPNEVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTTASTYYDFNSESDALETMQRARASEAKCFNENALQQPWPL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02708 240 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 231 IPR024097 GO:0006355
Cca09g02708 240 Pfam Helix-loop-helix DNA-binding domain 142 189 IPR011598 GO:0046983
Cca09g02708 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 188 IPR011598 GO:0046983
Cca09g02708 240 CDD bHLH_AtBPE_like 128 213 - -
Cca09g02708 240 Gene3D - 138 201 IPR036638 GO:0046983
Cca09g02708 240 PANTHER TRANSCRIPTION FACTOR BEE 1 15 231 - -
Cca09g02708 240 MobiDBLite consensus disorder prediction 88 106 - -
Cca09g02708 240 SMART finulus 144 194 IPR011598 GO:0046983
Cca09g02708 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 206 IPR036638 GO:0046983
Cca09g02708 240 MobiDBLite consensus disorder prediction 78 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02708 Cca-Chr9 52755045 52756869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02708 1 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 49.219 1.24e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g02708 HLH 0.00021 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00236 08 3272304 3274236 Cca09g02708 09 52755045 52756869 ECH
Cca07g02357 07 52158938 52162730 Cca09g02708 09 52755045 52756869 ECH
Cca06g00332 06 9384301 9385746 Cca09g02708 09 52755045 52756869 ECH
Cca09g02708 09 52755045 52756869 Cca09g02708 09 52755045 52756869 ECH