Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02699 ATGGCTTCAAACTCCATCTTCCCCATAACAGAATCAAGTGCACACCAAATCCTCAGTGCAAAATCATTAGTCAAAATACCTATTTCATGTTCATGTGTGGATGGGATCCGAAGGTCCATGTCAATCCTTTACACTGTTCATGCATCAGACACTCTTGCTACCATATCAGATGGCTATGGTGGGTTGGTCAGTGGTGAACAAATTAAGAGTGTGAACAGCATCAATGCCACCAACCCCTTGACGAGTGGAGGCACAGTTGTAATTCCACTGCCATGCACGTGCTTTAATAATTTGAACAATGGAGGGACCGCAATTTATATGTCGTATGTGGTGAAGAGAGGGGAGAGCTTGAGGAGCATTGCAACAATGATTGGGACAACTATTTCGGACTTGGAAACTGTGAATGGGCTTGGGGAAACTCAAGTGGATTCCGGAGACATACTATCTATTCCCATTGCAGCATGTTCATCAGCAACCTTGAATTGGTACAATGAGAGTATGATGGTCCCAAATGGCTCATATACATTAACTGCCAGCAACTGCATCAAATGCACTTGTGAATCAATGGATATCAAGATGCGATGTGTTCCTTCTGGACTGGATGTACCCTGCTATAATTTACGTTGCAAAGGATCCAATCTTATTATCGGCGATGAATATGTGGAGCATTCAAAAACAGGTTGCAATGTGAGCCAATGTGTTTACCGTGGCCATAGGGGCGGCAAAATTCTCAGTAGTATGAAGAACTCTTCTTACCTCCAATGTCCGGATAATCAAAGTCATAGTGGAGTATCATGTTCACCTTCCTTGTCACCATATCATGTAGACCCATTTGTTGTGTCTCCAAAGCCATCCTCCTTCTTGCCACTGCCAGTTTCTAAGGCTGCTCTGAGTACTCGTGCCACCTTCGGAAGGGTTGATCAAATTTTGATCAATGTGCTGCAATTATTCGTGTTAAAATTTATCCTTTATTTTCTGATTTAA 984 0.4268 MASNSIFPITESSAHQILSAKSLVKIPISCSCVDGIRRSMSILYTVHASDTLATISDGYGGLVSGEQIKSVNSINATNPLTSGGTVVIPLPCTCFNNLNNGGTAIYMSYVVKRGESLRSIATMIGTTISDLETVNGLGETQVDSGDILSIPIAACSSATLNWYNESMMVPNGSYTLTASNCIKCTCESMDIKMRCVPSGLDVPCYNLRCKGSNLIIGDEYVEHSKTGCNVSQCVYRGHRGGKILSSMKNSSYLQCPDNQSHSGVSCSPSLSPYHVDPFVVSPKPSSFLPLPVSKAALSTRATFGRVDQILINVLQLFVLKFILYFLI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02699 327 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 2 282 - -
Cca09g02699 327 ProSiteProfiles LysM domain profile. 42 88 IPR018392 -
Cca09g02699 327 SMART LysM_2 43 89 IPR018392 -
Cca09g02699 327 SMART LysM_2 108 151 IPR018392 -
Cca09g02699 327 Pfam LysM domain 109 151 IPR018392 -
Cca09g02699 327 Pfam LysM domain 44 89 IPR018392 -
Cca09g02699 327 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 2 282 - -
Cca09g02699 327 ProSiteProfiles LysM domain profile. 107 150 IPR018392 -
Cca09g02699 327 CDD LysM 108 137 IPR018392 -
Cca09g02699 327 SUPERFAMILY LysM domain 107 151 IPR036779 -
Cca09g02699 327 Gene3D LysM domain 36 100 IPR036779 -
Cca09g02699 327 Gene3D LysM domain 101 161 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02699 Cca-Chr9 52667040 52670557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02699 15 285 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 42.857 5.98e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02699 - - gmx:100819382 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02699 09 52667040 52670557 Cca09g02699 09 52667040 52670557 ECH