LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g02350	ATGTCGGCTGTGGTATCGGCACTTGTTCAAGTCCTTGGTGGAAATCCAGTGCATCAAGAACCACTAACAGTTTCTCAGTCCAGTGTTGTTGGGAatcaacatcaacaatcacaaccaccccaacatcaaGGAAACCTAAGAAGACATTATAGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCCGCAGAAATTCGCGACCCAAATAAAGCAAGACGTGTTTGGCTGGGAACCTTTGACACCGTCGAGGCTGCCGCACATGCTTACGATGAAGCTGCTCTCAGATTCAAAGGATCCAAAGCTAAGCTTAATTTTCCAGAAAGGGTCTCAGTCTCAGGGGACTCTCCTTACCTCACTATGCAATCCCAATCCGCACcttcttcttccaattcttcttcttTCCATGCCAAACCCAAACGTTGA	423	0.4255	MSAVVSALVQVLGGNPVHQEPLTVSQSSVVGNQHQQSQPPQHQGNLRRHYRGVRQRPWGKWAAEIRDPNKARRVWLGTFDTVEAAAHAYDEAALRFKGSKAKLNFPERVSVSGDSPYLTMQSQSAPSSSNSSSFHAKPKR	140

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g02350	140	PANTHER	DNA-BINDING DOMAIN	29	130	IPR044808	GO:0003700\|GO:0009873
	Cca09g02350	140	MobiDBLite	consensus disorder prediction	26	53	-	-
	Cca09g02350	140	MobiDBLite	consensus disorder prediction	26	44	-	-
	Cca09g02350	140	PRINTS	Ethylene responsive element binding protein signature	50	61	IPR001471	GO:0003700\|GO:0006355
	Cca09g02350	140	PRINTS	Ethylene responsive element binding protein signature	88	108	IPR001471	GO:0003700\|GO:0006355
	Cca09g02350	140	MobiDBLite	consensus disorder prediction	110	140	-	-
	Cca09g02350	140	CDD	AP2	49	107	IPR001471	GO:0003700\|GO:0006355
	Cca09g02350	140	ProSiteProfiles	AP2/ERF domain profile.	49	106	IPR001471	GO:0003700\|GO:0006355
	Cca09g02350	140	Gene3D	AP2/ERF domain	48	108	IPR036955	GO:0003700\|GO:0006355
	Cca09g02350	140	MobiDBLite	consensus disorder prediction	114	140	-	-
	Cca09g02350	140	Pfam	AP2 domain	49	98	IPR001471	GO:0003700\|GO:0006355
	Cca09g02350	140	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110	29	130	-	-
	Cca09g02350	140	SUPERFAMILY	DNA-binding domain	49	107	IPR016177	GO:0003677
	Cca09g02350	140	SMART	rav1_2	49	112	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g02350	Cca-Chr9	48796705	48800011	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g02350	1	127	AP2-EREBP Transcription Factor Family	AT5G61890	57.447	1.63e-42	139

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Cca09g02350		AP2	2.4e-16	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g00273	03	3997562	4000065	Cca09g02350	09	48796705	48800011	ECH
	Cca07g00740	07	11436554	11439395	Cca09g02350	09	48796705	48800011	ECH
	Cca07g02357	07	52158938	52162730	Cca09g02350	09	48796705	48800011	ECH
	Cca09g02350	09	48796705	48800011	Cca09g02350	09	48796705	48800011	ECH
	Cca09g02350	09	48796705	48800011	Cca03g00273	03	3997562	4000065	PCT