Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01901 ATGGCTCGAGTACAAAGTGGCCAAGCCAGTGAAGGGATTAAGTTGTTTGGGACAACGATTATGTTGTGTGGTAGAGAGATAAAAGAAGATAAAAACGAGAGTGAAGATGATGGAACAGAAGAAAAGAGGCCAGATAAGATCATTCCATGCCCTAGATGCAATAGCATGGAAACCAAGTTTTGTTATTTCAATAACTACAATGTTAATCAGCCTAGACATTTCTGTAAAGGTTGCCAGAGGTATTGGACAGCTGGCGGAGCCCTTCGTAACGTACCGGTGGGAGCCGGCCGACGAAAGGCCAAACCGCCTTACCATGATACGGACGGTGGATTCGCGGCCACCGTCCAACAACAATTTGGTTTGAAGGGATTGGCTTTGAATGAATGGCATGTTCACATTCACACTGTGGCTCACGGTGATTTTCGACAGTTTTTTCCATCTAAAAGGAGGAGTATGAGCTCAGGTGGTCAACGTCAACCTTTTTAA 486 0.4506 MARVQSGQASEGIKLFGTTIMLCGREIKEDKNESEDDGTEEKRPDKIIPCPRCNSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPYHDTDGGFAATVQQQFGLKGLALNEWHVHIHTVAHGDFRQFFPSKRRSMSSGGQRQPF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01901 161 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 6 156 - -
Cca09g01901 161 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Cca09g01901 161 PANTHER CYCLIC DOF FACTOR 2 6 156 IPR045174 GO:0003700|GO:0006355
Cca09g01901 161 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Cca09g01901 161 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01901 Cca-Chr9 43825941 43827039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01901 8 157 C2C2-Dof Transcription Factor Family AT2G34140 57.831 3.57e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca09g01901 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01901 - - ccaj:109816014 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01901 09 43825941 43827039 Cca09g01901 09 43825941 43827039 ECH