Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01669 ATGTTAGACAACACTGCTACTGCTGCACCATCTTCCTCTCATGCCGCCTTTGCATTATCCCAAAACGGGGTGGCTACTAGCAAAAGGAAAAGAAGACCCGCAGGCACCCCCGATCCGGATGCTGAGGTTGTGTCTCTCTCGCCGACCACGTTGTTGGAATCCGACAGATACGTCTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGGAGGCACAAGGTGCCGTGGAAGCTGCTCAAGAGGGAGACGCAAGGGCAGAAGAAGAGGGTGTTCGTGTGTCCAGAGCCTAGTTGCTTGCACCATGACCCTTGCCACGCCCTTGGGGACCTTGTGGGGATCAAGAAACACTTCCGAAGAAAGCACAGCAACCACAAGCAGTGGGTGTGTGATAAGTGCTCCAAAGGCTATGCTGTTCAGTCTGATTACAAAGCCCACATCAAAACCTGTGGCACCCGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTAGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCACCGGCCAGAGTTACAAGCACTACAACCTGCATGTTCTTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCACTGCCGAAACCATCTGATCAACCACctactactactactactGTCTTATTAACTTCAGAGATACACAATAACAAGTCCACCACCTCTCATAACTTAGAACTTCAGCTCTTACCCTCAATAAACTCCCAAGAGAAACGAAACTCAAAGGAGAACCATGAAACCCGTTTGAAACTTTCAATAGGCTCGTGTGGTAATGACAAAGGGAGTGAATCAGAGAGAGCATGTTCAGAAGCACATAGGAGCCCACGTGGAGCAGAAAGGAATGTGAGTGAGTATTCCACATTGGAAGTGGCGAGGTTGAAGGAGTTTGCAAGTGAGGAACTCAAGTTGGCCATGGCAGAAAAGGCTTATGCAGAAGAAGCTAGGAGAGAGGCCAAATGCCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCGCAAGCTGAACTTGCAAAGGCTGAAGAGTTGAGAAAGCAAGCCATCAAGAAGATAAGTTCCACTGTTATGGAAATAACATGTCATAGTTGCAAGCAACAGTTCCAGGCTTCAGCTGTTGGGGTTCCATCAGAAGAAACCTCCATTGTGATGAGTTACATGTCCTCAGCCACCACTGAAGGAGAAGCAGAATGA 1302 0.4816 MLDNTATAAPSSSHAAFALSQNGVATSKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFSIAPPLQGLPLPKPSDQPPTTTTTVLLTSEIHNNKSTTSHNLELQLLPSINSQEKRNSKENHETRLKLSIGSCGNDKGSESERACSEAHRSPRGAERNVSEYSTLEVARLKEFASEELKLAMAEKAYAEEARREAKCQIEIAELEFENAKRIRKQAQAELAKAEELRKQAIKKISSTVMEITCHSCKQQFQASAVGVPSEETSIVMSYMSSATTEGEAE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01669 433 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 433 - -
Cca09g01669 433 Coils Coil 339 387 - -
Cca09g01669 433 MobiDBLite consensus disorder prediction 1 43 - -
Cca09g01669 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cca09g01669 433 PANTHER OS03G0310200 PROTEIN 1 433 IPR039288 GO:0009630
Cca09g01669 433 MobiDBLite consensus disorder prediction 195 236 - -
Cca09g01669 433 MobiDBLite consensus disorder prediction 294 310 - -
Cca09g01669 433 MobiDBLite consensus disorder prediction 195 216 - -
Cca09g01669 433 Gene3D Classic Zinc Finger 35 100 - -
Cca09g01669 433 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Cca09g01669 433 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cca09g01669 433 MobiDBLite consensus disorder prediction 1 27 - -
Cca09g01669 433 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cca09g01669 433 MobiDBLite consensus disorder prediction 263 313 - -
Cca09g01669 433 Gene3D Classic Zinc Finger 119 196 - -
Cca09g01669 433 SMART c2h2final6 98 128 IPR013087 -
Cca09g01669 433 SMART c2h2final6 134 161 IPR013087 -
Cca09g01669 433 SMART c2h2final6 57 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01669 Cca-Chr9 40702602 40705196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01669 21 433 C2H2 Transcription Factor Family AT2G01940 56.164 6.62e-157 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca09g01669 zf-C2H2 0.004 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01669 09 40702602 40705196 Cca09g01669 09 40702602 40705196 ECH