Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01668 ATGGAGAATAACCCGGTTCAGCTTTTGCCTCATCTCACTGTGACACTTCTTCTTGTGATCACAGTTTTGTTTCCTGTGGCTGAAGCTGCAGCAGTTTCCTCCATCAAGACAGATGCACAGGCTCTTCTCATGTTTAAAAGGATGATTCAGAAGGATCCAAATAATGGAGTTTTGTCAGGGTGGAAGCTGAGCAAGAATCCATGCACCTGGGATGGAGTCACTTGCACCCTTGGAAGAGTTACTCAGCTTGATATTAGTGGGAATAATAACCTTGCTGAGACTATTTCTCTTGACCCTTTGTCTTCTTTAGATATGTTGTCTGTTTTGAAATTGTCTTTGAATTCATTTTCTGTAAATTCTACTTCTTTGCTTCAGCTGCCATATAGTTTGACACAGCTTGATCTATCCTTTGGTAGAGTCATAGGTCCTGTCCCTGAGAACCTTTTCTCCAAGTGTCCAAATCTTGTTGATGTAAATCTTTCTTACAACAACTTGACAGGCCCTATTCCTGAAAATTTCTTCCAAAATTCTGATAAACTGCAGGCCCTTGACATCTCTTTCAACAACCTGTCAGGGTCTATTTTTGGCCTGAAAATGGAATGCATTTCCTTGTTGCAACTTGATCTATCTGGAAATCATTTGTCAGACTCAATTCCACTCTCTTTGTCAAACTGCACCAGCCTTAAAAGTTTGAATTTAGCTTACAATATGATTTCTGGGGGAATCCCCAAAGCTTTGGGTCAGCTAAACAAACTACAGACTTTGGATCTTTCCCACAACCAACTCACTGGTTGGATCCCTTCTGAATTGGGAAATGCATGTGCTTCCCTTTTGGAACTTAAGCTTTCTTTCAACAACATCTCAGGCTCAATCCCATCTGGTTTCTCTTCTTGCACTTGGCTGCAGCTTCTTGACATATCTAACAACAATATGTCAGGGCAGTTACCAGATTCAATCTTTCAGAACCTTGGATCATTACAGGAACTGATGCTGGGAAATAATGCTATCACTGGTCAATTTCCTTCTTCAATATCTTCCTGCAAAAAGTTGAAGATTGTGGATTTCAGCTCAAATAAAATTTATGGATCTATCCCAAGAGATTTATGTCCAGGTGCAGCCTCACTTGAGGAGCTGAGAATGCCAGATAATCTCATTACAGGAGAAATCCCGGCTGAACTGTCAAAGTGCTCACAGCTGAAGACACTTGATTTTAGTCTTAACTATCTCAACGGCACAATCCCTGATGAGCTTGGAGAACTAGAAAATCTTGAGCAGCTAATAGCATGGTTCAATGGCTTGGAAGGAAGAATTCCACCAAAGTTGGGCCAGTGCAAGAATCTTAAGGATCTCATACTGAATAATAATCACCTCACAGGTGGAATTCCCATTGAGTTGTTCAATTGCAGCAATCTTGAATGGATATCACTGACAAGCAATGAACTCAGTGGCGAAATACCGCACGAGTTTGGCCTCTTGACAAGGTTAGCAGTTCTGCAGCTTGGAAACAATAGCTTGACTGGGGAGATACCAGCAGAGCTAGCAAATTGCAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACTGGAGAGATCCCTCCAAGACTTGGCAGGCAGCTAGGAGCAAAATCCTTGTATGGCATCCTTTCGGAGAACACTCTGGTGTTTGTAAGAAATGTTGGAAACTCATGCAAAGGAGTTGGAGGTTTGCTAGAATTCTTTGGTATTCGACCTGAAAGGCTCTTACAGGTCCCAACATTGAGGACTTGTGATTTCACAAGACTCTATTCGGGTCCTGTCCTCAGCATGTTCACCAAGTACCAGACTCTGGAGTATCTTGATCTTTCCTATAACCAGCTTCGTGGAAAAATCCCTGATGAATTTGGAGATATGGTGGCCTTACAGGTTCTTGAATTATCTCACAATCAGCTATCTGGAGAAATCCCTTCATCACTTGGCCAGCTAAAAAACTTGGGTGTGTTTGATGCATCACACAATAGGCTGCAGGGTCATATCCCAGACTCATTCTCAAACCTGTCATTCTTAGTGCAAATTGATCTATCTAACAATGAGTTAACAGGGCAAATTCCATCTAGGGGACAACTAAGTACACTTCCAGCTTCCCAGTATGCAAATAATCCAGGTCTTTGTGGTGTACCATTGCCTGATTGCAAGAATGACAACAGCCAAACCACAACAAATCCAAGTGATGATGTTAGCAAAGGGGGCCATAAAACAGCAACTGCAACATGGGCAAACAGCATTGTCATGGGAATCCTCATCTCTGTTGCTTCTGTATGTATTTTAATTGTGTGGGCAATTGCAATGCGAGCAAGGAGGAAGGAGGCTGAGGAAGTCAAGATGCTTAATAGCTTGCAAGCATGCCATGCTGCTACAACATGGAAAATTGACAAAGAGAAAGAGCCTCTAAGCATTAATGTGGCAACATTTCAGAGGCAGCTGAGGAAGCTAAAGTTTTCTCAGCTGATTGAAGCAACTAATGGCTTCTCAGCAGCAAGCCTTATTGGGTGTGGTGGTTTTGGGGAAGTGTTCAAGGCCACACTCAAAGACGGCTCAAGTGTTGCCATAAAGAAGCTCATTCGACTAAGCTGCCAGGGTGATCGAGAATTCATGGCAGAGATGGAAACCTTAGGGAAGATCAAGCACAGAAACCTTGTCCCTTTGTTGGGGTACTGCAAAGTGGGGGAAGAGAGGCTCCTCGTTTATGAGTACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAATCAAGACGCGTGATCGACGCATTTTAACGTGGGAAGAAAGGAAAAAGATCGCAAGAGGAGCTGCTAAAGGGCTTTGCTTCCTGCACCACAATTGCATCCCACACATCATACACAGAGACATGAAATCAAGCAATGTGCTACTTGACCATGAAATGGAGTCCAGGGTCTCAGATTTTGGAATGGCAAGACTAATAAGTGCCCTTGACACACATCTTAGTGTGAGCACACTAGCAGGAACACCAGGATATGTTCCCCCAGAGTACTACCAAAGTTTCAGGTGCACTGCCAAGGGAGATGTTTACTCATTTGGAGTTGTGATGTTGGAACTGCTTAGTGGGAAACGCCCTACTGATAAGGAAGACTTTGGTGACACCAACTTGGTAGGGTGGTCCAAGATGAAGGTCCGTGAAGGGAAGCAAATGGAAGTAATTGACTCTGACTTGCTTTTGGCCACTCAAGGAACAGATGAAGCAGAAGCCAAAGAAGTGAAGGAGATGATAAGATATTTAGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCCATGCTGAGAGAGCTTATGCCTGGATCAACTGATGGAAGCAGCAACAGTGCTTGA 3405 0.4344 MENNPVQLLPHLTVTLLLVITVLFPVAEAAAVSSIKTDAQALLMFKRMIQKDPNNGVLSGWKLSKNPCTWDGVTCTLGRVTQLDISGNNNLAETISLDPLSSLDMLSVLKLSLNSFSVNSTSLLQLPYSLTQLDLSFGRVIGPVPENLFSKCPNLVDVNLSYNNLTGPIPENFFQNSDKLQALDISFNNLSGSIFGLKMECISLLQLDLSGNHLSDSIPLSLSNCTSLKSLNLAYNMISGGIPKALGQLNKLQTLDLSHNQLTGWIPSELGNACASLLELKLSFNNISGSIPSGFSSCTWLQLLDISNNNMSGQLPDSIFQNLGSLQELMLGNNAITGQFPSSISSCKKLKIVDFSSNKIYGSIPRDLCPGAASLEELRMPDNLITGEIPAELSKCSQLKTLDFSLNYLNGTIPDELGELENLEQLIAWFNGLEGRIPPKLGQCKNLKDLILNNNHLTGGIPIELFNCSNLEWISLTSNELSGEIPHEFGLLTRLAVLQLGNNSLTGEIPAELANCSSLVWLDLNSNKLTGEIPPRLGRQLGAKSLYGILSENTLVFVRNVGNSCKGVGGLLEFFGIRPERLLQVPTLRTCDFTRLYSGPVLSMFTKYQTLEYLDLSYNQLRGKIPDEFGDMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKNDNSQTTTNPSDDVSKGGHKTATATWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWSKMKVREGKQMEVIDSDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTDGSSNSA 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01668 1134 Pfam Protein tyrosine and serine/threonine kinase 841 1119 IPR001245 GO:0004672|GO:0006468
Cca09g01668 1134 Pfam Brassinosteroid receptor island domain 547 606 IPR045381 -
Cca09g01668 1134 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 24 1123 - -
Cca09g01668 1134 Gene3D Ribonuclease Inhibitor 37 149 IPR032675 -
Cca09g01668 1134 Gene3D Phosphorylase Kinase; domain 1 797 912 - -
Cca09g01668 1134 SUPERFAMILY Protein kinase-like (PK-like) 818 1119 IPR011009 -
Cca09g01668 1134 Pfam Leucine rich repeat 204 262 IPR001611 GO:0005515
Cca09g01668 1134 Pfam Leucine rich repeat 301 360 IPR001611 GO:0005515
Cca09g01668 1134 Pfam Leucine rich repeat 603 645 IPR001611 GO:0005515
Cca09g01668 1134 Pfam Leucine rich repeat 129 190 IPR001611 GO:0005515
Cca09g01668 1134 SUPERFAMILY RNI-like 242 535 - -
Cca09g01668 1134 ProSiteProfiles Leucine-rich repeat profile. 203 224 IPR001611 GO:0005515
Cca09g01668 1134 ProSitePatterns Protein kinases ATP-binding region signature. 843 866 IPR017441 GO:0005524
Cca09g01668 1134 SUPERFAMILY L domain-like 590 722 - -
Cca09g01668 1134 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Cca09g01668 1134 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515
Cca09g01668 1134 PRINTS Leucine-rich repeat signature 180 193 - -
Cca09g01668 1134 PRINTS Leucine-rich repeat signature 249 262 - -
Cca09g01668 1134 Gene3D Ribonuclease Inhibitor 176 725 IPR032675 -
Cca09g01668 1134 SUPERFAMILY L domain-like 61 317 - -
Cca09g01668 1134 Gene3D Transferase(Phosphotransferase) domain 1 913 1131 - -
Cca09g01668 1134 CDD STKc_IRAK 843 1122 - -
Cca09g01668 1134 SMART LRR_typ_2 492 516 IPR003591 -
Cca09g01668 1134 SMART LRR_typ_2 152 176 IPR003591 -
Cca09g01668 1134 SMART LRR_typ_2 632 656 IPR003591 -
Cca09g01668 1134 SMART LRR_typ_2 249 273 IPR003591 -
Cca09g01668 1134 SMART LRR_typ_2 445 468 IPR003591 -
Cca09g01668 1134 SMART LRR_typ_2 323 347 IPR003591 -
Cca09g01668 1134 SMART LRR_typ_2 420 444 IPR003591 -
Cca09g01668 1134 SMART LRR_typ_2 517 540 IPR003591 -
Cca09g01668 1134 SMART LRR_typ_2 201 225 IPR003591 -
Cca09g01668 1134 SMART serkin_6 837 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01668 1134 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 24 1123 - -
Cca09g01668 1134 Gene3D - 550 606 - -
Cca09g01668 1134 ProSiteProfiles Protein kinase domain profile. 837 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01668 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 961 973 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01668 Cca-Chr9 40647364 40651166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01668 42 1122 Receptor kinase-like Gene Family AT1G55610 48.887 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Cca09g01668 PK_Tyr_Ser-Thr 2.1e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01668 09 40647364 40651166 Cca09g01668 09 40647364 40651166 ECH