Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01637 ATGCCGGTGGCGAAGCGAGAGACGTGCGATGGAAGAGTCATTGCTCACGTAGACATGGATTGCTTCTACGTTCAAGTGGAACAGAGAAAGCAACCTAATCTACGAGGCTTGCCTACTGCAGTCATACAGTACAACTCCTACAAAGGTGGGGCCCTCATTGCTGTTAGCTACGAGGCTCGCAGATGCGGTGTCAAACGTTCAATGCGTGGTGATGAAGCCAAGGAGGCATGCCCGCAAATTCAACTCGTCCAAGTCCCGGTCGCGCGTGGCAAGGCTGATCTCAACTCGTATAGGAGTGCGGGTTCGGAGGTTGTCTCGGTTCTTTCGCAGAAGGGCCGGTGCGAGAGGGCTTCAATTGATGAGGTATATATTGATCTAACTCATGCTGCTGAAGCCATGCTCATGGAAACTCCTCCAGAAAGCATGCAGGACTTTGAGGAGGAAGTTCTCAAGTCACATGTTTTAGGGCTGGAAATTCAGGATGGAAGTGATGCCAAAGATGAAGTTAGGAAGTGGCTTTGTAGGAGTGATGCTAGTTACCAAGATAAACTATTAGCTTGTGGGGCTCTCATTGTTAATGACCTCAGGATGCAGGTGCTGAAAGAGACTGAATTCACATGCTCTGCTGGTATTGCTCATAATAAGATGTTGGCTAAACTTGCAAGTGCCATGAACAAACCTGCACAACAAACTATTGTGCCACACTCATCTGTTGAAGGGTTGCTTGCATCTTTGCCAATAAAGAAAATGAAACACCTTGGGGGAAAGCTAGGGAGTTCCGTACAGATTGATCTCGGAGTCAACACCGTTGGTGATCTGCTTCAGTTTTCAGAAGAGAAGTTACAACAGTTATATGGGATCAATACTGGTACTTGGTTGTGGAATATTGCGAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTCCCAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGGCTTTGAAGACAATTGACTCTGTTCAACGCTGGCTTAATGAACTTTGTGAAGAGCTGAATGAACGCCTACACTCTGACCTGGATCTAAACAAACGGATTGCACAGACACTGACTCTGCATGCTAGAGCATATAAGACAGGGGATTCAGATTCACATAGAAAGTTCCCTTCTAAATCTTGTCCTTTAAGATATGGGACTAGAAAGATTCAAGAGGATGCCATAATTCTGTTCCAAGCTGGGTTACGTGATTTTTTGGGCTTCTGCAGTAAGGCTCATGGAAGCGAAAATAACTACTGGGGAGTAACATCACTTTCTGTCTCTGCAAGTAAAATTGTGTCCATACCATCTGGGACACATTCAATAGTTAAATACTTCGGTGGGCAATTTCCGTCAAGTTCTACATCAAATCAATCTCAAGATGTTGTCATTGATGGAGCTGCACCATCAGGTAGTGAAAATTGTTCGGGATTGGTTCCCTATGAATCTCAGCTTGAATATCCTGAAGACACGGGAATGAAGCATTCAAAATCTTCTTTGTATCAACAGGATCCACTGTGCAATTTATCCAGTAAAGCAGATAGCTTGACTGAAGAATCCCTCCTCATGTCACCCCTAGGAAGTGAAGACAGAATGATACATGATGAGTCACGTAGAGATTTACCTGCAAAAGATCACAGGCTTGTTTCAAATATCTCTGGTTTGAAAGCAGTTGGGAAGAAAAAGAGAGCAGGAAAGCAGCTTCAAGGGAATTCTTCAATTACAAATTTCTTCAGTAATTACCACAATTCCCAGTCTTCATCGGAGCAGAAGAATGTTACAAATGCCGAGGGTGTTAAAATATCATCATCACATGGATCTCAGTCTGCCGATGATAGTTATTCAACTCCTAATCGAGTTGGGCAGCCTGCTGAGCACCCTCATGAAGAGATTGATGCAAACAAGAGTGGATGTAGCGTAGGTAATATACCACAAGGAAGAAGGCAAGCTTGGAGTTATAACATTGATGAAATTGACCCTTCTATCATCGATGAATTACCACCAGAAATTCAGCAAGAGTTTCGAACCTGGCTTAGGCCGCATAAACGGTCTAATGTGGTTAAACGAGGCATATTATTCTCTCCGGCCGAATCCAACAAAAAATTGCTATATTCGAACAATTTAGGAGTGAAAATTGAAGAGGCAGACAGAGAAATGTTCATAAAAATCCAAGTTTCAAAAGAAAGTAAAACTTCCGCGAGGTGCGAGTCAGAGGCAGCGAATGCACGTGAGCCTCGCGTGTCTAACGACAACCCTAAGCCCTCCGCACTCCGCCTCTGTTCCCGTTGCGCAAGCATTGTGAACCTCAATGCCCAATATAAAAAGTTTACTTGCTGA 2346 0.4446 MPVAKRETCDGRVIAHVDMDCFYVQVEQRKQPNLRGLPTAVIQYNSYKGGALIAVSYEARRCGVKRSMRGDEAKEACPQIQLVQVPVARGKADLNSYRSAGSEVVSVLSQKGRCERASIDEVYIDLTHAAEAMLMETPPESMQDFEEEVLKSHVLGLEIQDGSDAKDEVRKWLCRSDASYQDKLLACGALIVNDLRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPHSSVEGLLASLPIKKMKHLGGKLGSSVQIDLGVNTVGDLLQFSEEKLQQLYGINTGTWLWNIARGISGEEVEGRLLPKSHGSGKTFPGPQALKTIDSVQRWLNELCEELNERLHSDLDLNKRIAQTLTLHARAYKTGDSDSHRKFPSKSCPLRYGTRKIQEDAIILFQAGLRDFLGFCSKAHGSENNYWGVTSLSVSASKIVSIPSGTHSIVKYFGGQFPSSSTSNQSQDVVIDGAAPSGSENCSGLVPYESQLEYPEDTGMKHSKSSLYQQDPLCNLSSKADSLTEESLLMSPLGSEDRMIHDESRRDLPAKDHRLVSNISGLKAVGKKKRAGKQLQGNSSITNFFSNYHNSQSSSEQKNVTNAEGVKISSSHGSQSADDSYSTPNRVGQPAEHPHEEIDANKSGCSVGNIPQGRRQAWSYNIDEIDPSIIDELPPEIQQEFRTWLRPHKRSNVVKRGILFSPAESNKKLLYSNNLGVKIEEADREMFIKIQVSKESKTSARCESEAANAREPRVSNDNPKPSALRLCSRCASIVNLNAQYKKFTC 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01637 781 Gene3D - 247 303 - -
Cca09g01637 781 Gene3D - 21 88 - -
Cca09g01637 781 MobiDBLite consensus disorder prediction 735 756 - -
Cca09g01637 781 PANTHER DNA POLYMERASE ETA 7 731 - -
Cca09g01637 781 Gene3D - 305 437 IPR036775 GO:0003684|GO:0006281
Cca09g01637 781 PIRSF DNA_pol_eta 6 723 - -
Cca09g01637 781 Gene3D - 89 233 IPR043128 -
Cca09g01637 781 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 310 437 IPR036775 GO:0003684|GO:0006281
Cca09g01637 781 Pfam impB/mucB/samB family C-terminal domain 311 438 IPR017961 GO:0003684|GO:0006281
Cca09g01637 781 SUPERFAMILY DNA/RNA polymerases 10 305 IPR043502 -
Cca09g01637 781 MobiDBLite consensus disorder prediction 582 623 - -
Cca09g01637 781 ProSiteProfiles UmuC domain profile. 14 254 IPR001126 GO:0006281
Cca09g01637 781 MobiDBLite consensus disorder prediction 582 645 - -
Cca09g01637 781 Pfam impB/mucB/samB family 17 222 IPR001126 GO:0006281
Cca09g01637 781 PANTHER DNA POLYMERASE ETA 7 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01637 Cca-Chr9 40235722 40243743 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01637 09 40235722 40243743 Cca09g01637 09 40235722 40243743 ECH