Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01631 ATGGGTGGTGTCTGGCTGTGGGTTTTAGTAATGGTAGCCATGGCGGGCTTGGCCCAGGCCCAACCCGAGGCGAAGTTCAAGTGCAGCACGGAGAACGGCACGTGTGGCGGCCTGGTCGGGTACTCCAACCCGGACGGCACCACGCTGGGCGACATCAAAAGTCTCTTCAACGTGAAGCACCTCCAGGACATCCTGGGCGCCAACAACCTCCCCTCAAACGCCACAAACAGCCACAAGGTGGGTCCCAACGAGGTTGTCAAAGTCCCGTTCCCTTGCAAGTGCAGCAACGCCACGGGACTCTCCAACGGAGTTCCGCGTTACAAAATAAAGAAAGGGGACGGGCTTGACGCCATAGCCCGGACCACGTTCGCGGGCCTCATGAAGTACCAGCAGATCCAGGTGGCCAATCACTTGCCCGACGCTAATAACATCACCGCCGGGGACACGCTTTATATTCCCCTCCCCTGTAGCTGCGATCAGGTGGATGGGAGCAGTGTGCTGCACTATGCACTCGTCGTCGCTTCTGGAAGCTCCGTCGAGAGCATTGCGGAACAGTATGCTACCACACAGCAGATTCTCCTCAACCTCAATGGGATTACTGACCCCAAGTCCCTCGAGGCCGGTCAGGTTCTCGATGTTCCCCTCCGAGCTTGTTCCTCCAGTGTCAAAAATAATTCGTTGGACTCTCCGTTGCTTCTCCCTATTGCTACTTACGTCTACACCGCACATGACTGCGTCAAATGCAACTGCGACTCCTCTAACAATTACATATTGCAATGCCAGCCATCCCATCTGAAACCAACCAACTGGTCTGTTTGCCCCACTGCGGAATGCTCAAGTAACGTCTTCCTTGGCAACACCACCTCTTCAGATTCTTGCAATCGCACTACCTGTGCCTATACTGGTTATAACGCCACCGCTATCTCGGCTGAACTTGTAACGCAAAACGTTTGTGCTGTGCCACCAAGTGGTTCAGGAGGATCAACTGGCTCAGGAGCGTCGAGGAGCACCTTGCAAGCCTTGTTTTCCAATAATCTTTTCATTCTCATTCACTTTCTGCTCGTTCTTCTCTATGTTTTGTAG 1083 0.5392 MGGVWLWVLVMVAMAGLAQAQPEAKFKCSTENGTCGGLVGYSNPDGTTLGDIKSLFNVKHLQDILGANNLPSNATNSHKVGPNEVVKVPFPCKCSNATGLSNGVPRYKIKKGDGLDAIARTTFAGLMKYQQIQVANHLPDANNITAGDTLYIPLPCSCDQVDGSSVLHYALVVASGSSVESIAEQYATTQQILLNLNGITDPKSLEAGQVLDVPLRACSSSVKNNSLDSPLLLPIATYVYTAHDCVKCNCDSSNNYILQCQPSHLKPTNWSVCPTAECSSNVFLGNTTSSDSCNRTTCAYTGYNATAISAELVTQNVCAVPPSGSGGSTGSGASRSTLQALFSNNLFILIHFLLVLLYVL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01631 360 PANTHER BNAC03G47500D PROTEIN 19 351 - -
Cca09g01631 360 CDD LysM 107 152 IPR018392 -
Cca09g01631 360 Gene3D LysM domain 105 159 IPR036779 -
Cca09g01631 360 SMART LysM_2 170 214 IPR018392 -
Cca09g01631 360 SMART LysM_2 106 153 IPR018392 -
Cca09g01631 360 CDD LysM 172 213 IPR018392 -
Cca09g01631 360 SUPERFAMILY LysM domain 106 154 IPR036779 -
Cca09g01631 360 Gene3D LysM domain 160 229 IPR036779 -
Cca09g01631 360 SUPERFAMILY LysM domain 172 214 IPR036779 -
Cca09g01631 360 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
Cca09g01631 360 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 19 351 - -
Cca09g01631 360 Pfam LysM domain 172 214 IPR018392 -
Cca09g01631 360 Pfam LysM domain 107 153 IPR018392 -
Cca09g01631 360 ProSiteProfiles LysM domain profile. 169 213 IPR018392 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01631 6 308 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 46.405 1.15e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01631 - - gmx:100804190 478.789