Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01627 ATGATGGATGTTCGAATGTTGGCTTCTCCCTTCCCTGGCTACGTAAAACCCTTTGCAAGACCAAACCCTTCTTTTCTTACGCTCAGGGCATCTTCTCTGCGCCATAACTACCCTCTTGCAAGCAAAATTATTGTTAAAAATTTACCATATTCTACGGGTGAGACTACTTTGCAGAAGGATTTTTCAAATTTTGGCGAGATAGCTGAAGTTAAAATGCTAAAAGACGTGAACACGAAAAAATCCAAGGGTATTGCTTTTATTCAATATACATGTCAAGATGCTGCCATGCTTGCACTAGAAACCATGGATCAGAAGAATTTTTATGGTCGAACAATCCATGTGGAAATTGCAAGATTGGGTTGGGATGATTTTGGTGCATCCCCAAGGGCCTCAGGGCCCCCAAAGAAGTGGGATTTGCCTGATCAAGGAGAAGTCATAGATTGTTGGTACTAA 453 0.415 MMDVRMLASPFPGYVKPFARPNPSFLTLRASSLRHNYPLASKIIVKNLPYSTGETTLQKDFSNFGEIAEVKMLKDVNTKKSKGIAFIQYTCQDAAMLALETMDQKNFYGRTIHVEIARLGWDDFGASPRASGPPKKWDLPDQGEVIDCWY 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01627 150 Gene3D - 29 143 IPR012677 -
Cca09g01627 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Cca09g01627 150 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 20 142 - -
Cca09g01627 150 SMART rrm1_1 42 115 IPR000504 GO:0003723
Cca09g01627 150 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 20 142 - -
Cca09g01627 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 113 IPR000504 GO:0003723
Cca09g01627 150 SUPERFAMILY RNA-binding domain, RBD 28 121 IPR035979 GO:0003676
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01627 09 40155501 40158804 Cca09g01627 09 40155501 40158804 ECH