Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01621 ATGATGGCGCCGAGCACCGGAGACCTCCAACTAACTTCCGCCGGCGCCGGCGAATATTCCGACGAACTCGAAGACGTTCGCCTCCTCGACTCCTACGACAAAAACGACGTCGCCGAGAATGACACGAAGCGGATTCAGGTCAGAATCACCGGGATGACCTGCGCCGCTTGCTCTAACTCCGTCGAGGCCGCTCTCAAGTCCGTTAACGGAGTCACCGACGCCTCCGTCGCTCTTCTCCAGAACAAAGCCGACGTCGCTTTCAAGCCGAGCCTCGTCAAGGACGAGGACATTAAGAATGCGATCGAGGACGCAGGTTTTGAGGCCGAGATCTTGCCGGAGTCCGGTGCGGCGGGCGGCGCCGCCGCCGTGGTGGGGCAGTTCACGATCGGAGGGATGACGTGTGCGGCGTGTGTGAATTCCGTGGAGGGGATTCTGAGGGGGCTTAAGGGAGTGAAAAGAGCGGTGGTGGCTTTGGCTACTTCGTTGGGTGAAGTTGAGTATGATCCAAGCGTGATTAGCAAAGATGATATTGTGGCTGCGATTGAGGATGCTGGTTTTGAGGGTTCGTTTGTGCAGAGTAATGGGCAGGACCAGGTTGTGTTAGGGGTTGGTGGCGTGTACTCTTTGGGTGATGCTCAGGTTTTGGAAGGGATGCTGAGTGGGATGAAAGGGGTGAGGCAGTTTCGGTTTGACTCGATGTTGAACGAACTTGATGTGGTGTTTGACCCTCAAGTTATTAGTTCGAGGTCGTTGGTTGATGGGATCCACTTGGGAAGTAATGGCAAGTTTGAATTGCATGTTAGAAATCCTTACGCTAGAATGGCTTCTAAAGATGGTTCAGAAACTTCGACTATGTTTCGCCTTTTTATTTCCAGTTTGTTTCTCAGTATTCCTCTATTCTTCATGGGGGTGATCTGTCCTCATATACCGTTGATGTACTCTTTATTACTTTGGAAATGTGGGCCTTTTTTCATGGGTGATTGGCTGAAGTGGGCGTTGGTGAGTGTCATTCAATTTGTGATTGGGAAACGCTTCTATATAGCAGCTGGCAGAGCACTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACTACAGCATCCTATATTTATTCTGTTTGTGCTCTTCTGTATGGTGCCTTTACTGGATTTTGGTCTCCAATATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAGTGCCTTGCCAAGGGAAAGACCTCTGATGCCATTAAGAAGCTAGTGGAACTTACTCCTGCAACAGCTTTATTGATTGTCAAAGATAAAGGTGGTAGAACTATTGAAGAAAGGGAAATAGATTCCTTGCTCATTCAACCTGGTGACACATTAAAAGTTCTTCCTGGTACCAAGATTCCTTCTGATGGCATTGTTACTTGGGGTTCAAGTTATATAAATGAGAGTATGGTAACCGGTGAATCCATACCCGTTTCAAAGGATGTCAATGCATCTGTTATTGGAGGTACTATCAATTTGCATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTAAGTCAGATAATTAGTTTAGTGGAGACTGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACTGTTGTGGCTTTGGCATTATTGACCCTATTGTGTTGGTATATAGCTGGAGCTCTTGGAGCATACCCAGATGAATGGCTTCCGGAAAATGGAAATCACTTTGTTTTTGCACTTATGTTTTCAATATCTGTCGTGGTGATTGCATGTCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCCAACAATGGTGTGTTAATTAAAGGAGGAGACTCCCTGGAAAGGGCTCAGATGGTTAAGTACGTCATTTTTGACAAAACAGGCACTCTAACTCAGGGGAAAGCCACTGTTACTGCTGCTAAGGTGTTCACAGGAATGGACCGAGGAGATTTTCTAACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGCCAAAGCGATATTGCAATATGCACGCCATTTTCATTTCTTTGATGAGTCTTCTCCTACCAGTGGTAGGAAGAATGATGCCAAGGAGTTCAAGTCAGGGTGGCTTTATGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGAGGGGTCCAGTGCTTTATAGATGGGAAGCCTATTTTGTATGTCCTGGACAGGTTGGCAACCGGAAGCTGCTGGAGGAAAATGGCATAA 2295 0.4693 MMAPSTGDLQLTSAGAGEYSDELEDVRLLDSYDKNDVAENDTKRIQVRITGMTCAACSNSVEAALKSVNGVTDASVALLQNKADVAFKPSLVKDEDIKNAIEDAGFEAEILPESGAAGGAAAVVGQFTIGGMTCAACVNSVEGILRGLKGVKRAVVALATSLGEVEYDPSVISKDDIVAAIEDAGFEGSFVQSNGQDQVVLGVGGVYSLGDAQVLEGMLSGMKGVRQFRFDSMLNELDVVFDPQVISSRSLVDGIHLGSNGKFELHVRNPYARMASKDGSETSTMFRLFISSLFLSIPLFFMGVICPHIPLMYSLLLWKCGPFFMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYIYSVCALLYGAFTGFWSPIYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLIVKDKGGRTIEEREIDSLLIQPGDTLKVLPGTKIPSDGIVTWGSSYINESMVTGESIPVSKDVNASVIGGTINLHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVALALLTLLCWYIAGALGAYPDEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLERAQMVKYVIFDKTGTLTQGKATVTAAKVFTGMDRGDFLTLVASAEASSEHPLAKAILQYARHFHFFDESSPTSGRKNDAKEFKSGWLYDVSDFSALPGRGVQCFIDGKPILYVLDRLATGSCWRKMA 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01621 764 CDD HMA 46 109 IPR006121 GO:0046872
Cca09g01621 764 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 360 747 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca09g01621 764 PANTHER ATP7, ISOFORM B 4 749 - -
Cca09g01621 764 Pfam haloacid dehalogenase-like hydrolase 642 737 - -
Cca09g01621 764 Gene3D - 42 113 - -
Cca09g01621 764 PRINTS Copper-transporting ATPase 1 signature 70 93 - -
Cca09g01621 764 PRINTS Copper-transporting ATPase 1 signature 44 69 - -
Cca09g01621 764 PRINTS Copper-transporting ATPase 1 signature 147 168 - -
Cca09g01621 764 TIGRFAM TIGR00003: copper ion binding protein 45 108 IPR006122 GO:0005507
Cca09g01621 764 TIGRFAM TIGR00003: copper ion binding protein 126 187 IPR006122 GO:0005507
Cca09g01621 764 ProSiteProfiles Heavy-metal-associated domain profile. 124 190 IPR006121 GO:0046872
Cca09g01621 764 PANTHER HEAVY METAL P-TYPE ATPASE 4 749 - -
Cca09g01621 764 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 399 670 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g01621 764 Pfam Heavy-metal-associated domain 127 187 IPR006121 GO:0046872
Cca09g01621 764 Pfam Heavy-metal-associated domain 47 107 IPR006121 GO:0046872
Cca09g01621 764 Gene3D - 651 756 IPR023299 GO:0000166
Cca09g01621 764 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872
Cca09g01621 764 ProSitePatterns Heavy-metal-associated domain. 129 158 IPR017969 GO:0046872
Cca09g01621 764 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 648 748 IPR023299 GO:0000166
Cca09g01621 764 SUPERFAMILY Calcium ATPase, transmembrane domain M 383 637 IPR023298 -
Cca09g01621 764 CDD HMA 126 187 IPR006121 GO:0046872
Cca09g01621 764 SUPERFAMILY HMA, heavy metal-associated domain 126 194 IPR036163 GO:0046872
Cca09g01621 764 Gene3D - 125 190 - -
Cca09g01621 764 SUPERFAMILY Calcium ATPase, transduction domain A 446 532 IPR008250 -
Cca09g01621 764 Gene3D - 414 536 - -
Cca09g01621 764 Pfam E1-E2 ATPase 427 625 - -
Cca09g01621 764 ProSitePatterns Heavy-metal-associated domain. 49 79 IPR017969 GO:0046872
Cca09g01621 764 PRINTS P-type cation-transporting ATPase superfamily signature 646 660 - -
Cca09g01621 764 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Cca09g01621 764 ProSitePatterns E1-E2 ATPases phosphorylation site. 648 654 IPR018303 -
Cca09g01621 764 SUPERFAMILY HMA, heavy metal-associated domain 39 113 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01621 Cca-Chr9 40068342 40073913 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01621 09 40068342 40073913 Cca09g01621 09 40068342 40073913 ECH