Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01617 ATGAAAAACTCAATGAAGAGCAGCGGGTGCAGTGAGCCATCATCAAGAGGAGACATGAATGTGAAGCCTGCATGGTTAGAGAAGCTTATGGCTGAGACATTCTTTGGTGGTTGTGGGATCCACCAGAATCACAGGAAGAACGAGAAGAACGTCTTTTGCTTGCACTGTTGCCTTAGCATCTGCCCCCATTGCCTCCCTTCTCACCCCTCCCATTCCCTTCTCCAGGTGAGAAGGTATGTTTACCATGACGTAGTTCGATTGGGTGATCTGGAAAAACTCGTCGATTGTTCCAATATTCAGCCATATACCATTAACGGTGCCAAAGTGATATTCTTAAATCAGAGGCCACAGTCAAGGTCATGCAAAGGCACTGCCAATGCTTGCTGCACTTGTGACAGGATTCTTCAGGAGCCCTTTCACTTCTGTTCTCTCTCATGCAAGTTCGAGGGTCTAAGAGTTGATTGCTATACTCAATTTGTCCCCACTTCCACTGAGGCTACCAGCAGCAACAACAAGACCAATGGCTTCTTCCTATCCCTTGGAAGCAGGAGAAAGGGTGCCCCCCATAGAGCTCCTCTTTCCTAG 585 0.4786 MKNSMKSSGCSEPSSRGDMNVKPAWLEKLMAETFFGGCGIHQNHRKNEKNVFCLHCCLSICPHCLPSHPSHSLLQVRRYVYHDVVRLGDLEKLVDCSNIQPYTINGAKVIFLNQRPQSRSCKGTANACCTCDRILQEPFHFCSLSCKFEGLRVDCYTQFVPTSTEATSSNNKTNGFFLSLGSRRKGAPHRAPLS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01617 194 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 20 151 - -
Cca09g01617 194 PANTHER OS02G0172800 PROTEIN 20 151 - -
Cca09g01617 194 Pfam PLATZ transcription factor 77 147 IPR006734 -
Cca09g01617 194 ProSiteProfiles Zinc finger B-box type profile. 38 76 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01617 Cca-Chr9 40019983 40024364 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Cca09g01617 PLATZ 5.1e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01617 09 40019983 40024364 Cca09g01617 09 40019983 40024364 ECH