Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01615 ATGAGGGAACCATCGTCGGTGGGATTCGATGGCAACGGCGTCGTTTCTCCGCCGCCGCAAGCTCTCCTCGAGAGACTCAAAGACTACGGTCAAGAAGACGCTTTCGCCCTCTGGTACGAGCTCTCCCCGGAGGAGCGCGACCTTCTCGTCAAGGACATCGAGAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCTCAAGGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGTGGAGGAGAGAAGCCAGGAGGAACGAGAGAGATGGTGGAAAATGGGGCTGAAGGCTATTTCAGATGGCAAGTTAGCTGTGTTGCTTTTATCTGGTGGCCAGGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAATATTGGACTTCCATCTGGAAAATCACTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAACGAGAATTCTGCTTCTTCAGCGCAAATACATTGGTACATAATGACTAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTCGAGGCAGAACAGGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGTAGATTTATTATGGAGACTCCATACAGGGTAGCAAAGGCTCCTGACGGGAATGGTGGAGTGTATTCAGCTCTGAAATCTACTAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTACATTGATTGCTACGGAGTTGACAATGCACTGGTTAGAGTTGCTGATCCAACTTTTTTAGGCTACTTCATTGATAAAGGTGTTTCTGCTGCTGCAAAAGTTGTCCGCAAGGCATACCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGCAAAGGTGGTCCTCTAACTGTAGTTGAATACAGTGAGTTGGACCAGTCGCTAGCTTCTGCAGTCAATCAAGCAACTGGCCGTCTTCGTTTTTGTTGGAGTAATGTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCGTTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCGTTTCCATATGCTCCTACGACTGCACTTTTTGAGGTATTACGAGAGGAGGAATTTGCTCCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTGCTTGTTCTTCGACTCCATACTCGTTGGGTAGTTGCTGCAGGTGGCTTCTTAACACATTCAGTACCCTTATATGCAACAGGAGTTGAAGTGTCACCACTCTGTTCGTATGCTGGAGAAAACCTGGAGCCTATATGTCGAGGGAGAACATTTCATGCACCTTGGAGTTCTCAGTCCCAGACATGTTGCAAGATTAATGTTGTTGCTGAGAAATACcttctaattctctactctctcacttctctcttatctcattttacttTTAAGATGGCAGCATCATCTGCATGCCTTGTTGGGAATGGTTTATCTACACGGGGTAATAGGATAGCTCTTAACAAGGACTTCAATGGAAGATATCTCTACTCATCTTGGAGACTTTCATCTTTGAATCATAAGGCATCAAAAGCGTTTTCCATAAAGGCATCCTTGGAGCAAAGGCAACAGGAAGGGAGAAGGGGGTTTTTGAAATTGTTGGTTGGAAATGTGGGGGTTGGCTTGCCTGCATTATTGGGAACTACTGGCAAAGCTTATGCTGATGAGCAAGCCGTTTCCTCCTCCAGAATGTCTTACTCCAGGTTTCTGGAGTACTTGGACAAGGACAGGGTTAAAAAAGTGGATCTGTATGACAATGGAACCATTGCTTATGTTGAGGCTGTTTCTCCTGAGTTGGGGAATAGGGTTCAGCGTGTTAGGGTTCAGCTTCCTGGACTTAACCAAGAGCTCCTTCAGAAATTCAGGGAAAAGAATATTGACTTTGCAGCTCATAGTCCCCAGGAAGAATCGGGTTCTCTTTTAGCTAACCTGATTGGGAATCTGGCTTTCCCTTTGATCTTGATTGGAGGATTGTTCCTTCTCTCCAGACGATCTGGAGGGATGGGAGGTCCTGGTGGGCCTGGATTTCCTCTTGCTTTTGGTCAATCCAAAGCCAAGTTTCAAATGGAACCTAACACTGGAGTGACATTTGATGATGTTGCTGGTGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAGTTTCTGAAGAAGCCTGAAAGGTTCACTGCGGTGGGGGCTCGCATACCGAAAGGAGTTCTTCTAGTTGGTCCTCCAGGAACTGGGAAGACCCTTTTAGCTAAGGCTATTGCTGGTGAAGCTGGTGTTCCATTTTTCTCGATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCCCTTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGAAGACAAAGAGGGACTGGTATTGGTGGTGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAATACTGGTATCATTGTCATTGCAGCAACCAACAGGGCTGACATTCTTGATTCTGCCCTATTGAGACCAGGCCGGTTTGATAGACAGGTAACAGTTGATGTTCCAGATATAAGGGGAAGGACTGAAATCCTAAAGGTTCATGGTAGCAATAAAAAGTTTGATGCTGATGTTTCTCTTGATGTAATTGCAATGAGAACGCCTGGTTTTAGTGGAGCTGATCTTGCGAATCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGACAGCAATTTCATCTAAAGAGATTGATGATTCTATTGACAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAGAGTTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGTGGAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGTGGTCAAGCTCGGGGTCTTACATGGTTCATTCCTAACGATGATCCAACTCTGATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGAGGACTTGGTGGTAGGGCTGCAGAAGAAGTCATTTTTGGTGAGCCTGAAGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATCACCGGTTTGGCAAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGAGGCATCAGCACAAAGTGGGGATGTTATCATGAGAATGATGGCAAGGAACTCAATGTCAGAGAAGCTTGCAGAAGACATCGATGCTGCTGTCAAGAGGCTCTCAGATGATGCATATGAAATTGCATTAGAGCATATAAGGAACAACCGTGAGGCAATTGATAAGATTGTGGAAGTCCTTCTGGAGAAGGAGACAATAACTGGTGATGAATTCCGTGCTATACTGTCTGAATTTGTTGAAATTCCAGTTGAAAATAGGGTCCCTCCTTCAACTCCAGTTCCAGCCACTGTTTGA 3648 0.4441 MREPSSVGFDGNGVVSPPPQALLERLKDYGQEDAFALWYELSPEERDLLVKDIESLDLSRIDRIIRCSLRSQGLPAAAIEPVPESSVSTVEERSQEERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCAQRLAAQATNENSASSAQIHWYIMTSPFTDEATRKFFESHKFFGLEAEQVTFFQQGTIPCVSKDGRFIMETPYRVAKAPDGNGGVYSALKSTKLLEDMASKGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQSLASAVNQATGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPTTALFEVLREEEFAPVKNANGSNVDTPDSAKLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYAGENLEPICRGRTFHAPWSSQSQTCCKINVVAEKYLLILYSLTSLLSHFTFKMAASSACLVGNGLSTRGNRIALNKDFNGRYLYSSWRLSSLNHKASKAFSIKASLEQRQQEGRRGFLKLLVGNVGVGLPALLGTTGKAYADEQAVSSSRMSYSRFLEYLDKDRVKKVDLYDNGTIAYVEAVSPELGNRVQRVRVQLPGLNQELLQKFREKNIDFAAHSPQEESGSLLANLIGNLAFPLILIGGLFLLSRRSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPNDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMEASAQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDDAYEIALEHIRNNREAIDKIVEVLLEKETITGDEFRAILSEFVEIPVENRVPPSTPVPATV 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01615 1215 Gene3D Peptidase M41 1000 1198 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca09g01615 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 992 IPR027417 -
Cca09g01615 1215 ProSitePatterns AAA-protein family signature. 892 910 IPR003960 GO:0005524|GO:0016887
Cca09g01615 1215 PANTHER METALLOPROTEASE M41 FTSH 514 1205 - -
Cca09g01615 1215 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 18 499 IPR029044 -
Cca09g01615 1215 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 63 1208 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cca09g01615 1215 CDD UDPGlcNAc_PPase 101 420 - -
Cca09g01615 1215 CDD AAA 764 921 - -
Cca09g01615 1215 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 486 IPR029044 -
Cca09g01615 1215 Gene3D - 923 998 - -
Cca09g01615 1215 SUPERFAMILY FtsH protease domain-like 1004 1201 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca09g01615 1215 SMART AAA_5 785 924 IPR003593 -
Cca09g01615 1215 Pfam UTP--glucose-1-phosphate uridylyltransferase 63 447 IPR002618 GO:0070569
Cca09g01615 1215 Pfam ATPase family associated with various cellular activities (AAA) 789 920 IPR003959 GO:0005524|GO:0016887
Cca09g01615 1215 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 700 1193 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cca09g01615 1215 Pfam Peptidase family M41 1003 1192 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca09g01615 1215 Gene3D - 613 693 - -
Cca09g01615 1215 Pfam FtsH Extracellular 614 687 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Cca09g01615 1215 Pfam AAA+ lid domain 944 987 IPR041569 -
Cca09g01615 1215 Gene3D - 740 922 IPR027417 -
Cca09g01615 1215 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 514 1205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01615 Cca-Chr9 39990975 40009207 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01615 09 39990975 40009207 Cca09g01615 09 39990975 40009207 ECH