LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00497	ATGAACAATGGTGCTAAGAGGGCTACACTGCCATCAAATCTCAACATTAAGGATAAGCATACACCCCAATCCATTGCCAACAAAGCACCATTATCCCCCAAGCAACCATTTTTCATTGGTGTTGCTGGTGGAACTGCATCTGGAAAAACAACTGTATGTAACATGATAAATACACAACTTCATGATCGACGTGTTGTCCTCATTACACAAGACTCATTTTATTACTCATTAAGTGACGAGACACTACAAAAAGTTAATGAGTACAATTTTGATCATCCTGATGCCTTTGATACAAAACTTATGCTTTCAACAATGGAGAAATTAAAATGTGGACAACCTGTCGCTGTACCAAATTATGATTTGAACACCCATAAGAGAATTGAACCTGGACGCCAGGTTCACCCTGAAGATGTCATAATATTAGAAGGGATTTTAGTTCTTCATGATTCTGGTGTTCGTAATCTTTTGAACATGAAGATCTTTGTTGATGAAGATTCTGATGTACGCCTTGCACGAAGGATGCAACGTCTTGCTATTGAACGTAGGAGGAATATTGCGGATGTTCTAGACCAATATTGCAGATTCGTAAAGCCTAGTTTTGAAGAATTTGTATTGCCAACTAAAAAGTATGCTGATATTATCATTCCGACTGGAGGAGACAATCATGTTGCCATTGACTTAATTGTACAAAACATACGTATGAAGCTTGGCCAACATGATTTATGTAAAATATATCCTAATGTTTTTGTTATATTTTCCACATTTCAGATAAAAGGAATGCATACTCTCATTCGTGATGCTAAGGCAACAAAGCATGACTTTGTCTTTTACTCAGATCGTCTTATTAGACTGGTTGTTGAGCATGGACTAGGCCACCTTCCTTTCACTGAAAAACAAGTAATAACACCAACAGGATCTGTATACTCTGGTGTAGTTTTCTGTAGTAGATTGTGTGGAGTTTCCGTCATTAGAAGTGGAGAAAGCATGGAAAATGCATTGAGAGCATGTTGTAAGGGAATCAAAATTGGCAAAATCCTTATCCATGGACATGGTACTAATGGTCGACAGTTAATCTATGAGAAGCTACCATCAGACATTGCAAGTCGTCATGTGTTGCTACTCGATCCAGTTTTGGCCACAGGTAATTCTGCTGTCAAAGCTATCTCTTTCCTTCTCAATAAAGGTGTACCAGAATCAAACATTATATTTTTGAATTTAGTAGCAGCACCACAAGGAGTAAATGCAGTTTGTGAGAGATTTCCAATGTTGAAACTCGTGACATCAGAGATTGATGCATCACTGAATGAGAATTCGCATGTGATCCCTGGCTTAGGACAGTTTGATGATCGTTACTTTGCCACTGATGATTAG	1371	0.3807	MNNGAKRATLPSNLNIKDKHTPQSIANKAPLSPKQPFFIGVAGGTASGKTTVCNMINTQLHDRRVVLITQDSFYYSLSDETLQKVNEYNFDHPDAFDTKLMLSTMEKLKCGQPVAVPNYDLNTHKRIEPGRQVHPEDVIILEGILVLHDSGVRNLLNMKIFVDEDSDVRLARRMQRLAIERRRNIADVLDQYCRFVKPSFEEFVLPTKKYADIIIPTGGDNHVAIDLIVQNIRMKLGQHDLCKIYPNVFVIFSTFQIKGMHTLIRDAKATKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVVFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTNGRQLIYEKLPSDIASRHVLLLDPVLATGNSAVKAISFLLNKGVPESNIIFLNLVAAPQGVNAVCERFPMLKLVTSEIDASLNENSHVIPGLGQFDDRYFATDD	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00497	456	TIGRFAM	udk: uridine kinase	37	235	IPR000764	-
	Cca09g00497	456	Pfam	Uracil phosphoribosyltransferase	253	454	-	-
	Cca09g00497	456	Pfam	Phosphoribulokinase / Uridine kinase family	38	223	IPR006083	GO:0005524\|GO:0016301
	Cca09g00497	456	Gene3D	-	239	454	IPR029057	-
	Cca09g00497	456	Gene3D	-	32	238	IPR027417	-
	Cca09g00497	456	PRINTS	Uridine kinase signature	36	53	-	-
	Cca09g00497	456	PRINTS	Uridine kinase signature	66	77	-	-
	Cca09g00497	456	PRINTS	Uridine kinase signature	111	126	-	-
	Cca09g00497	456	PRINTS	Uridine kinase signature	167	177	-	-
	Cca09g00497	456	PRINTS	Uridine kinase signature	181	192	-	-
	Cca09g00497	456	PRINTS	Uridine kinase signature	203	216	-	-
	Cca09g00497	456	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	27	228	IPR027417	-
	Cca09g00497	456	PANTHER	URIDINE KINASE	16	452	-	-
	Cca09g00497	456	CDD	UMPK	38	233	IPR000764	-
	Cca09g00497	456	PANTHER	URIDINE KINASE-LIKE PROTEIN 5	16	452	-	-
	Cca09g00497	456	CDD	PRTases_typeI	317	427	IPR000836	-
	Cca09g00497	456	SUPERFAMILY	PRTase-like	238	454	IPR029057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00497	Cca-Chr9	12422446	12435332	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00497	30	456	PRT Gene Family	AT5G40870	72.664	0.0	655

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g00497	09	12422446	12435332	Cca08g00283	08	4071301	4076285	ECH
	Cca09g00497	09	12422446	12435332	Cca09g02800	09	53610664	53614119	ECH
	Cca09g00497	09	12422446	12435332	Cca09g00497	09	12422446	12435332	ECH