Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00464 ATGCGAATGAGTTGTAACGGGTGTCGCGTCTTGCGCAAAGGCTGTACCCAAGATTGTAGCATTCGACCCTGCTTGCAATGGATCAAGAACCCAGAATCTCAAGCTAATGCAACCGTTTTCCTTGCCAAATTCTATGGTCGTGCTGGCCTCATCAACCTCGTCAATGCTGGTCCTCAACACCTTCGACCAGCGATTTTTCGATCCTTGTTATACGAAGCATGTGGTAGAATTGTGAACCCGATTTACGGTTCAGTGGGTTTGTTATGGTCTGGGAGCTGGCAGCTTTGTCAAGCCGCTGTGGAAGCCGTTTTGAAGGGTGAGCCGATCACGCCGATCACGTCTGAAGCCGCGGCTAATGGTCAAGCCCCACCTCTTAAACCCTACGACATACGCCACGTGTCAAAAGACGAGAGCCCCGCGAATGAAACAAAAAGGGTCAAGACCCGGTCCAAGCGAGCCGCTGGGTCGCTTATTAAACCGAAGGCGAGTAAAGGGACCCGGTTCGCTGCGACGGAACCGGAGACGGCGAGTCACGAGTCCGGGCTGAGCCACTTGTCGGAGGCGGCGGCGGCGATGATGGTGGAGGGAGAGAGTAAAGAGAGTGAGAGCGTGGTGTCGGCGGAGACTTCGAACCTGTTCCGTGACGAAGCGGAGGCGGTTGAGGCGGGTGGGCGAACCGGCGAGGTTGGTTTGGAATTGACGCTTGGGTTGGAACCGGTGTCACGTGCGTGTCACGTGGTGCCGGTGAAAAAGAGAAGAATTGAGTTGGGTGAGAAATTGGCGTGTAAGATGGAGCTGGGGCTTGAGTACTCGGCTTAA 819 0.5507 MRMSCNGCRVLRKGCTQDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLINLVNAGPQHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPITPITSEAAANGQAPPLKPYDIRHVSKDESPANETKRVKTRSKRAAGSLIKPKASKGTRFAATEPETASHESGLSHLSEAAAAMMVEGESKESESVVSAETSNLFRDEAEAVEAGGRTGEVGLELTLGLEPVSRACHVVPVKKRRIELGEKLACKMELGLEYSA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00464 272 MobiDBLite consensus disorder prediction 115 182 - -
Cca09g00464 272 PIRSF AS2 1 157 IPR017414 -
Cca09g00464 272 PIRSF AS2 141 272 IPR017414 -
Cca09g00464 272 MobiDBLite consensus disorder prediction 129 149 - -
Cca09g00464 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 269 - -
Cca09g00464 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 269 - -
Cca09g00464 272 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cca09g00464 272 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00464 Cca-Chr9 11414169 11415713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00464 1 268 AS2 family AT3G02550 61.511 1.66e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca09g00464 LOB 1.2e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00464 09 11414169 11415713 Cca09g00464 09 11414169 11415713 ECH
Cca07g02510 07 53918554 53920816 Cca09g00464 09 11414169 11415713 ECH
Cca02g02664 02 47946229 47947174 Cca09g00464 09 11414169 11415713 ECH