Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00339 ATGGGGAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGTCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTTTGCAGCAGCTCAAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTTAGCAAACCAGCCAAAGAGCTTGAGCAGAGCAGCTACCGAGAGTACTTGAAGCTGAAAGGAAGATTTGAATCTCTTCAAAGGACTCAAAGAAACCTTCTAGGTGAAGATTTGGGCCCATTGAATTCCAAAGAACTTGAGCAGCTTGAGAGGCAACTAGATTCATCTCTCAAGCAAGTGAGGTCCACAAAGACTCAATTCATGCTGGACCAGTTAGCTGATCTCCAAAACAAGGAGCACATGTTGGTAGAAGCAAACAGAGCTTTGACCATGAAGCTGGAAGAAATCAATTCACGAAACCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGCAATATGGTACACAGAATGCGCACTCTCAAGGCTTCTTTCAGCCTTTGGAGTGCAATCCCACATTGCAGATAGGTCCTGACTACAGGTACAACCCTGAGGCCTCAGATCAGCTAACTGCCACAACTCAAGCTCAACAAGTGAATGGCTTTATTCCTGGATGGATGCTTTGA 747 0.4471 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKGRFESLQRTQRNLLGEDLGPLNSKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRALTMKLEEINSRNQYRQTWEAGDQSMQYGTQNAHSQGFFQPLECNPTLQIGPDYRYNPEASDQLTATTQAQQVNGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00339 248 PANTHER MADS BOX PROTEIN 1 235 - -
Cca09g00339 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cca09g00339 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g00339 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g00339 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g00339 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Cca09g00339 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cca09g00339 248 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g00339 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca09g00339 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g00339 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g00339 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g00339 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 235 - -
Cca09g00339 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca09g00339 248 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00339 Cca-Chr9 7947251 7954547 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca09g00339 K-box 4.7e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00339 09 7947251 7954547 Cca03g00684 03 12518303 12530873 ECH
Cca09g00339 09 7947251 7954547 Cca11g02043 11 45993038 45999716 ECH
Cca09g00339 09 7947251 7954547 Cca09g00339 09 7947251 7954547 ECH
Cca07g02282 07 51330477 51337703 Cca09g00339 09 7947251 7954547 ECH
Cca06g00520 06 15692679 15705029 Cca09g00339 09 7947251 7954547 ECH
Cca09g00339 09 7947251 7954547 Cca07g02282 07 51330477 51337703 PCT