Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00280 ATGGCAGTCATTGCACTGAAGTGCCCCTCCATTGAAGTGGCTGTTGTTGACATCTCCAAATCCCGCATTGCAGCATGGAACAGTGACCAGCTTCCAATCTATGAGCCAGGCCTTGATGGTGTGGTGAAGCAATGCCGTGGCAAGAACCTCTTCTTCAGCACAGATGTTGAGAAACATGTCTATGAGGCTGACATTGTGTTTGTCTCTGTCAACACGCCGACCAAAACCCGCGGACTTGGAGCCGGCAAGGCTGCAGATCTGACATACTGGGAGAGTGCAGCTCGCATGATTGCTGACGTCTCCAAGAGTGACAAGATTGTGGTGGAGAAATCCACTGTCCCTGTGAAAACTGCTGAGGCCATAGAGAAAATTTTGACTCACAATGGCAAGGGCATCAAGTTCCAAATCCTGTCAAACCCTGAGTTCCTTGCTGAGGGAACTGCAATCCAAGACCTTTTCAATCCAGATAGGGTCCTCATTGGAGGAAGGGAAACCCCAGAAGGCCAAAAAGCCATTCAAACATTGAAAAATGTTTATGCTCATTGGGTTCCTGAGGGGAGAATCTTAACCACAAATCTGTGGTCTGCTGAACTGTCAAAGCTTGCTGCTAATGCCTTCTTGGCGCAGAGAATTTCATCTGTGAATGCTATGTCAGCACTTTGTGAGGCCACTGGGGCAAATGTCACACAAGTGTCCTATGCTGTTGGAACTGACACAAGGATTGGACCAAAGTTTTTGAATGCTAGTGTTGGCTTTGGTGGCTCATGCTTCCAGAAGGACATCCTGAACCTTGTCTACATTTGTGAGTGCAATGGTTTGCCAGAGGTGGCTGAGTACTGGAAACAAGTGATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACCGTGTGGTTTCGTCAATGTTCAACACGGTTGCTACCAAGAAGATTGCAATTCTGGGGTTTGCATTCAAGAAGGACACTGGGGACACAAGGGAGACACCAGCAATTGATGTGTGCAAGGGACTACTTGGTGACAAGGCACGTCTAAGCATCTATGATCCGCAGGTAACTGAGGACCAAATTCAGAGGGATCTTTGGATGAACAAGTTTGATTGGGACCACCCCATTCACTTGCAGCCAACTAGTCCTACAACTGAGAAGAAAGTGAGTGTGGTTTGGGATGCATATGAGGCCACAAAGGATGCAGATGGTGTTTGCATTTTGACCGAGTGGGATGAGTTTAAGACCCTTGATTATCAGAAGGTGTATGACAACATGAGAAAACCAGCATTTGTGTTTGATGGAAGGAACATTGTGGATGTTGATAAGTTACGTGAGATTGGCTTCATTGTGTACTCAATTGGGAAGCCACTTGATCCATGGCTTAAGGACATGCCAGCCGTGGCATAA 1395 0.471 MAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVYEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNGKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQTLKNVYAHWVPEGRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVTQVSYAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNTVATKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSPTTEKKVSVVWDAYEATKDADGVCILTEWDEFKTLDYQKVYDNMRKPAFVFDGRNIVDVDKLREIGFIVYSIGKPLDPWLKDMPAVA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00280 464 Gene3D - 1 192 - -
Cca09g00280 464 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 299 447 IPR036220 -
Cca09g00280 464 SMART UDPG_MGDP_dh_C_a_2_a 312 436 IPR014027 GO:0016616|GO:0051287
Cca09g00280 464 PIRSF UDPglc_DH_euk 1 464 IPR028356 GO:0003979
Cca09g00280 464 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 10 432 IPR017476 GO:0016616
Cca09g00280 464 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2 170 IPR001732 GO:0016616|GO:0051287
Cca09g00280 464 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 312 435 IPR014027 GO:0016616|GO:0051287
Cca09g00280 464 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 1 464 - -
Cca09g00280 464 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 464 IPR028356 GO:0003979
Cca09g00280 464 Gene3D - 225 461 - -
Cca09g00280 464 Gene3D - 193 224 - -
Cca09g00280 464 PIRSF UDPglc_GDPman_dh 1 451 IPR017476 GO:0016616
Cca09g00280 464 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 198 IPR036291 -
Cca09g00280 464 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 194 288 IPR014026 GO:0016616|GO:0051287
Cca09g00280 464 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 194 293 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00280 Cca-Chr9 6611388 6612782 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00280 09 6611388 6612782 Cca11g01999 11 45419041 45421182 ECH
Cca09g00280 09 6611388 6612782 Cca09g00280 09 6611388 6612782 ECH
Cca06g00568 06 16741208 16744128 Cca09g00280 09 6611388 6612782 ECH