Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02494 ATGGGTTTGAGTTCTAAGCAGGTTTCTAATAGAGGACTTGATTGGAAGCAGACCTTGTTGCAGGCTCAAAACTTGGAGCTTCCAAAGCCTCCACCTATGAGGAAACAACAGCAACAAACGCAGCAACCAGAGCCTTTGAAGTGTCCAAGATGTGACTCTATTAACACCAAATTTTGTTACTACAACAACTACAACAAGGCTCAGCCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTCGGCGGTGGCAGGAAGAATAAGCGAGCCAAGAAATCAACCACTCAAACCACAACCACAGCCACAGCCACCACTTCTATTAGTACCACCACCTCAAATGCCAACATGGATGGTGAGTTGAGTACTCGCATCAAAGTTCCTCCTCTTGCAGTGGATGATCATCACAAAACCATACCTTCCTCTCTCTATCTTCCACAGCAGAATCTGATGAGTTCCAAAGACTCCGAAGACAAAGACTTTGGTATTGGTAATGGCATCTTTCTGAGTTCGACTGCGCCTTATCCTCAAAACCAAGGCCTTCTCTTCCCCTTCACAACATCGAACTCTTTTGACACGAACACGTGTGCAATATCAACCTCTTTGCGATCCTCCAGTGTGTATAACTATGGTGAAGAGTTTAAAATAATGGAGGAGCCAACCATCAACAGTGTTATGCCCGGCACCAACACTCAGCCATGGGAGATAGCTGCAACAAGTTCTGGCTTGGAAATGTCTAACTATTGGAGTTGGGAGGACATCGATTCGTTGGTCTCAACTGATCTTAATGTTCCTTGGGATGATTCTGATATCAAACCCTGA 849 0.4558 MGLSSKQVSNRGLDWKQTLLQAQNLELPKPPPMRKQQQQTQQPEPLKCPRCDSINTKFCYYNNYNKAQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAKKSTTQTTTTATATTSISTTTSNANMDGELSTRIKVPPLAVDDHHKTIPSSLYLPQQNLMSSKDSEDKDFGIGNGIFLSSTAPYPQNQGLLFPFTTSNSFDTNTCAISTSLRSSSVYNYGEEFKIMEEPTINSVMPGTNTQPWEIAATSSGLEMSNYWSWEDIDSLVSTDLNVPWDDSDIKP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02494 282 PANTHER OS06G0284500 PROTEIN 17 208 - -
Cca08g02494 282 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Cca08g02494 282 MobiDBLite consensus disorder prediction 21 47 - -
Cca08g02494 282 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Cca08g02494 282 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 208 IPR045174 GO:0003700|GO:0006355
Cca08g02494 282 MobiDBLite consensus disorder prediction 103 129 - -
Cca08g02494 282 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
Cca08g02494 282 MobiDBLite consensus disorder prediction 87 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02494 Cca-Chr8 59137874 59139499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02494 41 144 C2C2-Dof Transcription Factor Family AT5G60200 51.887 2.35e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca08g02494 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02494 - - gmx:778119 465.692